Difference between revisions of "OMP ST:6326 ! Escherichia coli UPEC CFT073"

From OMPwiki
(Table edited by Kcunningham via TableEdit)
(Table edited by Kcunningham via TableEdit)
 
(19 intermediate revisions by the same user not shown)
Line 266: Line 266:
 
no differences
 
no differences
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
medium:? CP (10 mg/mL)?
+
medium:>= CP (10 mg/mL)?
 
|
 
|
 
*temperature:37C
 
*temperature:37C
−
*medium:? CP (10 mg/mL)
+
*medium:>= CP (10 mg/mL)
 
*medium:swimming motility medium
 
*medium:swimming motility medium
 
|
 
|
Line 355: Line 355:
 
no differences
 
no differences
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
medium:? CP (10 mg/mL)?
+
medium:>= CP (10 mg/mL)?
 
|
 
|
 
*temperature:37C
 
*temperature:37C
 +
*medium:>= CP (10 mg/mL)
 
*medium:swarming motility medium
 
*medium:swarming motility medium
−
*medium:? CP (10 mg/mL)
 
 
|
 
|
 
ECO:0005803
 
ECO:0005803
Line 417: Line 417:
 
no differences
 
no differences
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
medium:? PG (1%)?
+
medium:>= PG (1%)?
 
|
 
|
 
*other:p(PfliC)-lux
 
*other:p(PfliC)-lux
 
*temperature:37C
 
*temperature:37C
−
*medium:? PG (1%)
+
*medium:>= PG (1%)
 
*medium:LB medium
 
*medium:LB medium
 
|
 
|
Line 449: Line 449:
 
no differences
 
no differences
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
medium:? PGP (1%)?
+
medium:>= PGP (1%)?
 
|
 
|
 
*other:p(PfliC)-lux
 
*other:p(PfliC)-lux
 
*temperature:37C
 
*temperature:37C
−
*medium:? PGP (1%)
+
*medium:>= PGP (1%)
 
*medium:LB medium
 
*medium:LB medium
 
|
 
|
Line 481: Line 481:
 
no differences
 
no differences
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
medium:? PGRE (1%)?
+
medium:>= PGRE (1%)?
 
|
 
|
 
*other:p(PfliC)-lux
 
*other:p(PfliC)-lux
 
*temperature:37C
 
*temperature:37C
−
*medium:? PGRE (1%)
+
*medium:>= PGRE (1%)
 
*medium:LB medium
 
*medium:LB medium
 
|
 
|
Line 498: Line 498:
 
|
 
|
 
Pomegranate rind extract (PGRE) was tested  
 
Pomegranate rind extract (PGRE) was tested  
 +
|-
 +
|
 +
OMP_AN:7529
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
|
 +
ECO:0000112
 +
|
 +
western blot evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7530
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7529
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGRE (5%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGRE (5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000112
 +
|
 +
western blot evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate rind extract (PGRE) was tested
 +
|-
 +
|
 +
OMP_AN:7531
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7529
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PG (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PG (10%)
 +
*medium:LB medium
 +
|
 +
ECO:0000112
 +
|
 +
western blot evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Punicalagin (PG) is found in pomegranate tannins
 +
|-
 +
|
 +
OMP_AN:7532
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7529
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGP (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGP (10%)
 +
*medium:LB medium
 +
|
 +
ECO:0000112
 +
|
 +
western blot evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate fruit powder (PGP) was tested
 +
|-
 +
|
 +
OMP_AN:7534
 +
|
 +
 +
|
 +
OMP:0000111
 +
|
 +
presence of cell motility by swimming
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:30C
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7535
 +
|
 +
 +
|
 +
OMP:0007093
 +
|
 +
decreased cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7534
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGRE (10%)?
 +
|
 +
*temperature:30C
 +
*medium:>= PGRE (10%)
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate rind extract (PGRE) was tested
 +
|-
 +
|
 +
OMP_AN:7536
 +
|
 +
 +
|
 +
OMP:0007093
 +
|
 +
decreased cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7534
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PG (10%)?
 +
|
 +
*temperature:30C
 +
*medium:>= PG (10%)
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Punicalagin (PG) is found in pomegranate tannins
 +
|-
 +
|
 +
OMP_AN:7537
 +
|
 +
 +
|
 +
OMP:0007093
 +
|
 +
decreased cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7534
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate fruit powder (PGP) was tested
 +
|-
 +
|
 +
OMP_AN:7538
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7571
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGRE (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGRE (10%)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate rind extract (PGRE) was tested
 +
|-
 +
|
 +
OMP_AN:7539
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7571
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PG (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PG (10%)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Punicalagin (PG) is found in pomegranate tannins
 +
|-
 +
|
 +
OMP_AN:7540
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7571
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGP (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGP (10%)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate fruit powder (PGP) was tested
 +
|-
 +
|
 +
OMP_AN:7541
 +
|
 +
 +
|
 +
OMP:0000215
 +
|
 +
decreased number of flagella
 +
|
 +
Relative to: OMP_AN:7569
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGRE (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGRE (10%)
 +
*medium:LB broth
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate rind extract (PGRE) was tested
 +
|-
 +
|
 +
OMP_AN:7543
 +
|
 +
 +
|
 +
OMP:0000176
 +
|
 +
biofilm phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*other:96 well plate
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7544
 +
|
 +
 +
|
 +
OMP:0007020
 +
|
 +
increased biofilm formation
 +
|
 +
Relative to: OMP_AN:7543
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*other:96 well plate
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7545
 +
|
 +
 +
|
 +
OMP:0007020
 +
|
 +
increased biofilm formation
 +
|
 +
Relative to: OMP_AN:7543
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (5 ug/mL)?
 +
|
 +
*other:96 well plate
 +
*temperature:37C
 +
*medium:>= PIP (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7546
 +
|
 +
 +
|
 +
OMP:0007020
 +
|
 +
increased biofilm formation
 +
|
 +
Relative to: OMP_AN:7552
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*other:Polystyrene tubes
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7547
 +
|
 +
 +
|
 +
OMP:0007020
 +
|
 +
increased biofilm formation
 +
|
 +
Relative to: OMP_AN:7552
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*other:Polystyrene tubes
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7548
 +
|
 +
 +
|
 +
OMP:0007093
 +
|
 +
decreased cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7570
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7549
 +
|
 +
 +
|
 +
OMP:0007093
 +
|
 +
decreased cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7570
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7550
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7572
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (5 ug/mL)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7551
 +
|
 +
NOT
 +
|
 +
OMP:0005323
 +
|
 +
altered cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7551
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:37C
 +
*medium:>= RES (5 ug/mL)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7552
 +
|
 +
 +
|
 +
OMP:0000176
 +
|
 +
biofilm phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*other:Polystyrene tubes
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7553
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V815 motA
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7554
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7553
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V815 motA
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7555
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7586
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V9E2 motB
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7556
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7587
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VGH0 fimA
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7557
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7588
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P66797 uvrY
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7558
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7589
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VAE3 fliC
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7559
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7590
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P62608 papA
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7563
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7553
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V815 motA
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7564
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7586
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V9E2 motB
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7565
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7587
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VGH0 fimA
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7566
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7588
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P66797 uvrY
 +
CHEBI:28487 Reserpine (RES)
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7567
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7590
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P62608 papA
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7568
 +
|
 +
NOT
 +
|
 +
OMP:0007080
 +
|
 +
altered gene expression
 +
|
 +
Relative to: OMP_AN:7589
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VAE3 fliC
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7569
 +
|
 +
 +
|
 +
OMP:0000029
 +
|
 +
presence of flagellum
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0005033
 +
|
 +
electron microscopy evidence
 +
|
 +
PMID:22708802
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7570
 +
|
 +
 +
|
 +
OMP:0000111
 +
|
 +
presence of cell motility by swimming
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7571
 +
|
 +
 +
|
 +
OMP:0000067
 +
|
 +
presence of cell motility by swarming
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7572
 +
|
 +
 +
|
 +
OMP:0000067
 +
|
 +
presence of cell motility by swarming
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7586
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V9E2 motB
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7587
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VGH0 fimA
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7588
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P66797 uvrY
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7589
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VAE3 fliC
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7590
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P62608 papA
 +
|
 +
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  

Latest revision as of 15:34, 30 November 2016

Strain Summary

Strain Name

Escherichia coli UPEC CFT073

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: UPEC
  • NCBI Taxonomy ID: 199310
Genotype
Strain Reference
Strain availability

ATCC 700928

Ancestry
Annotated phenotypes


edit table



Notes

Phenotype Annotation

Showing 1 to 10 of 58 entries
Annotation IDnotOMP IDOMP term nameRelative phenotype informationExperimental conditionECO IDECO term nameReferenceAnnotation ExtensionNotes

OMP_AN:7515

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:p(PfliC)-lux
  • temperature:37C
  • medium:0.4% glucose
  • medium:M9 minimal medium
 ECO:0000049

reporter gene assay evidence

PMID:21821749[1]

UniProtKB:A0A0H2VAE3

OMP_AN:7516

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7515

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:0.4% glucose
  • medium:M9 minimal medium
  • medium:cPACs (0.1 mg/mL)
 ECO:0000049

reporter gene assay evidence

PMID:21821749[1]

UniProtKB:A0A0H2VAE3 CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7517

OMP:0000029

presence of flagellum

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB broth
 ECO:0005033

electron microscopy evidence

PMID:21821749[1]

OMP_AN:7518

OMP:0000215

decreased number of flagella

Relative to: OMP_AN:7517

Genotype differences:

no differences

Condition differences:

medium:CP (10 mg/mL)?

  • temperature:37C
  • medium:CP (10 mg/mL)
  • medium:LB broth
 ECO:0005033

electron microscopy evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

OMP_AN:7519

OMP:0000111

presence of cell motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

OMP_AN:7520

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7519

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • temperature:37C
  • medium:cPACs (0.1 mg/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7521

OMP:0006100

abolished cell motility by swimming

Relative to: OMP_AN:7519

Genotype differences:

no differences

Condition differences:

medium:>= CP (10 mg/mL)?

  • temperature:37C
  • medium:>= CP (10 mg/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

OMP_AN:7522

OMP:0000067

presence of cell motility by swarming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

OMP_AN:7523

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7522

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • temperature:37C
  • medium:cPACs (0.1 mg/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7524

OMP:0006167

abolished cell motility by swarming

Relative to: OMP_AN:7522

Genotype differences:

no differences

Condition differences:

medium:>= CP (10 mg/mL)?

  • temperature:37C
  • medium:>= CP (10 mg/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

Showing 1 to 10 of 58 entries
edit table



Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Jump up to: 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Hidalgo, G et al. (2011) Inhibition of Escherichia coli CFT073 fliC expression and motility by cranberry materials. Appl. Environ. Microbiol. 77 6852-7 PubMed OMPwiki page
  2. ↑ Jump up to: 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 Asadishad, B et al. (2012) Pomegranate materials inhibit flagellin gene expression and flagellar-propelled motility of uropathogenic Escherichia coli strain CFT073. FEMS Microbiol. Lett. 334 87-94 PubMed OMPwiki page
  3. ↑ Jump up to: 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 3.12 3.13 3.14 3.15 3.16 3.17 3.18 3.19 3.20 3.21 3.22 3.23 3.24 3.25 3.26 3.27 3.28 3.29 Dusane, DH et al. (2014) Alkaloids modulate motility, biofilm formation and antibiotic susceptibility of uropathogenic Escherichia coli. PLoS ONE 9 e112093 PubMed OMPwiki page
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