Difference between revisions of "OMP ST:5479 ! Schizosaccharomyces pombe smc6delta"

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!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
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OMP:0007391
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OMP:0007461
 
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abolished viability
 
abolished viability
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<hr>Genotype differences:<br>
 
<hr>Genotype differences:<br>
−
+leu1-32/leu1-32smc6delta  -leu1-32/leu1-32
+
+leu1-32/leu1-32smc6delta  -leu1-32/leu1-32 -h+/h+
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
 
no differences
 
no differences
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PMID:20473289
 
PMID:20473289
 +
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 +
 +
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 +
 +
|-
 +
|
 +
OMP_AN:12800
 +
|
 +
 +
|
 +
OMP:0007461
 +
|
 +
nonviable vegetative cell population
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32smc6delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
PMID:23697806
 +
|
 +
 +
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 +
 +
|-
 +
|
 +
OMP_AN:13820
 +
|
 +
 +
|
 +
OMP:0007728
 +
|
 +
altered mitotic cell cycle
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32smc6delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:18412
 +
|
 +
NOT
 +
|
 +
OMP:0007713
 +
|
 +
altered vegetative cell size
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32smc6delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:18806
 +
|
 +
 +
|
 +
OMP:0007718
 +
|
 +
abolished viability of vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32smc6delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:18932
 +
|
 +
 +
|
 +
OMP:0007708
 +
|
 +
altered vegetative cell shape
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32smc6delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 
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Latest revision as of 13:18, 1 February 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe smc6delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: smc6delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32smc6delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:6708

OMP:0007461

abolished viability

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32smc6delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

PMID:20473289[1]

OMP_AN:12800

OMP:0007461

nonviable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32smc6delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

PMID:23697806[2]

OMP_AN:13820

OMP:0007728

altered mitotic cell cycle

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32smc6delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:18412

NOT

OMP:0007713

altered vegetative cell size

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32smc6delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:18806

OMP:0007718

abolished viability of vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32smc6delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:18932

OMP:0007708

altered vegetative cell shape

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32smc6delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
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