Difference between revisions of "OMP ST:5450 ! Schizosaccharomyces pombe asp1delta"

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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 +
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 +
Schizosaccharomyces pombe asp1delta
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 +
||
 +
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 +
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 +
*Pangenome: Schizosaccharomyces pombe
 +
*Subspecies and/or strain: asp1delta
 +
*NCBI Taxonomy ID:4896
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 +
||
 +
ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 asp1delta
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 +
||
 +
PMID:20473289
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 +
||
 +
http://us.bioneer.com/products/spombe/spombeoverview.aspx
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 +
||
 +
parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 +
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W57e00bf1b8be8"  class=" tableEdit OMP_annotation_table dataTable"   
 
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!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
+
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:6669
 +
|
 +
 
 +
|
 +
OMP:0007460
 +
|
 +
viable vegetative cell population
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:20473289
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:12412
 +
|
 +
 
 +
|
 +
OMP:0007460
 +
|
 +
viable vegetative cell population
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:YES?
 +
|
 +
*temperature:25-32C
 +
*medium:YES
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000003 low
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:18604
 +
|
 +
NOT
 +
|
 +
OMP:0007713
 +
|
 +
altered vegetative cell size
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:YES?
 +
|
 +
*medium:YES
 +
*temperature:25-32C
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000003 low
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:19124
 +
|
 +
 
 +
|
 +
OMP:0007708
 +
|
 +
altered vegetative cell shape
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:YES?
 +
|
 +
*medium:YES
 +
*temperature:25-32C
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000003 low
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:19340
 +
|
 +
 
 +
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:YES?
 +
|
 +
*temperature:25-32C
 +
*medium:YES
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:22669
 +
|
 +
 
 +
|
 +
OMP:0007771
 +
|
 +
presence of population growth at alkaline pH
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
temperature:above ~32 degrees Celsius25-32C
 +
medium:YES?
 +
|
 +
*temperature:above ~32 degrees Celsius
 +
*medium:YES
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:22670
 +
|
 +
 
 +
|
 +
OMP:0007708
 +
|
 +
altered vegetative cell shape
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
temperature:above ~32 degrees Celsius25-32C
 +
medium:YES?
 +
|
 +
*temperature:above ~32 degrees Celsius
 +
*medium:YES
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:22671
 +
|
 +
 
 +
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
temperature:above ~32 degrees Celsius25-32C
 +
medium:YES?
 +
|
 +
*temperature:above ~32 degrees Celsius
 +
*medium:YES
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
  
 
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Latest revision as of 15:10, 5 July 2021

Strain Summary

Strain Name

Schizosaccharomyces pombe asp1delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: asp1delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 asp1delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:6669

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:20473289[1]

OMP_AN:12412

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

medium:YES?

  • temperature:25-32C
  • medium:YES
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000003 low has_penetrance: FYPO_EXT:0000001 high

OMP_AN:18604

NOT

OMP:0007713

altered vegetative cell size

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

medium:YES?

  • medium:YES
  • temperature:25-32C
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000003 low has_penetrance: FYPO_EXT:0000001 high

OMP_AN:19124

OMP:0007708

altered vegetative cell shape

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

medium:YES?

  • medium:YES
  • temperature:25-32C
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000003 low has_penetrance: FYPO_EXT:0000001 high

OMP_AN:19340

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

medium:YES?

  • temperature:25-32C
  • medium:YES
 ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:22669

OMP:0007771

presence of population growth at alkaline pH

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

temperature:above ~32 degrees Celsius25-32C medium:YES?

  • temperature:above ~32 degrees Celsius
  • medium:YES
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000001 high

OMP_AN:22670

OMP:0007708

altered vegetative cell shape

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

temperature:above ~32 degrees Celsius25-32C medium:YES?

  • temperature:above ~32 degrees Celsius
  • medium:YES
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000001 high

OMP_AN:22671

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

temperature:above ~32 degrees Celsius25-32C medium:YES?

  • temperature:above ~32 degrees Celsius
  • medium:YES
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000001 high


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=OMP_ST:5450_!_Schizosaccharomyces_pombe_asp1delta&oldid=143627"