OMP ST:4451 ! Schizosaccharomyces pombe uge1delta: Difference between revisions

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==Strain Summary==
==Strain Summary==
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{|  id="N57e009be08237"  class=" tableEdit Strain_info_table" 
 
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Schizosaccharomyces pombe uge1delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
 
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Schizosaccharomyces pombe
*Subspecies and/or strain: uge1delta
*NCBI Taxonomy ID:4896
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 uge1delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:20473289
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
http://us.bioneer.com/products/spombe/spombeoverview.aspx
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||
 
 
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==Phenotype Annotation==
==Phenotype Annotation==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C57e009be09e1d"  class=" tableEdit OMP_annotation_table dataTable" 
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:5385
|
 
|
OMP:0007460
|
viable vegetative cell population
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+uge1delta  -h+/h+
<hr>Condition differences:<br>
:?
temperature:?25-32C
|
 
|
 
|
 
|
PMID:20473289
|
 
|
|-
|
OMP_AN:11623
|
 
|
OMP:0007460
|
viable vegetative cell population
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+uge1delta  -h+/h+
<hr>Condition differences:<br>
:?
temperature:?25-32C
|
 
|
 
|
 
|
PMID:23697806
|
 
|
|-
|
OMP_AN:14720
|
 
|
OMP:0007718
|
abolished viability of vegetative cell
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+uge1delta  -h+/h+
<hr>Condition differences:<br>
:?
temperature:?25-32C
|
 
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
has_penetrance: FYPO_EXT:0000003 low
|
|-
|
OMP_AN:14721
|
 
|
OMP:0007756
|
 
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+uge1delta  -h+/h+
<hr>Condition differences:<br>
:?
temperature:?25-32C
|
 
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
has_penetrance: FYPO_EXT:0000003 low
|
|-
|
OMP_AN:15153
|
 
|
OMP:0007716
|
viable vegetative cell
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+uge1delta  -h+/h+
<hr>Condition differences:<br>
:?
temperature:?25-32C
|
 
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
 
|
|-
|
OMP_AN:15197
|
 
|
OMP:0007756
|
stubby vegetative cell
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+uge1delta  -h+/h+
<hr>Condition differences:<br>
:?
temperature:?25-32C
|
 
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
 
|
|-
|
OMP_AN:27099
|
 
|
OMP:0007803
|
decreased vegetative cell population growth rate
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+uge1delta  -h+/h+
<hr>Condition differences:<br>
medium:glucose MM?
|
*temperature:25-32C
*medium:glucose MM
|
ECO:0007147
|
competitive growth assay evidence used in manual assertion
|
PMID:25452419
|
 
|
 
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Latest revision as of 19:46, 20 June 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe uge1delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: uge1delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 uge1delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:5385

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+uge1delta -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:20473289[1]

OMP_AN:11623

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+uge1delta -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:23697806[2]

OMP_AN:14720

OMP:0007718

abolished viability of vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+uge1delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000003 low

OMP_AN:14721

OMP:0007756

Relative to: OMP_AN:1028

Genotype differences:

+uge1delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000003 low

OMP_AN:15153

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+uge1delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:15197

OMP:0007756

stubby vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+uge1delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:27099

OMP:0007803

decreased vegetative cell population growth rate

Relative to: OMP_AN:1028

Genotype differences:

+uge1delta -h+/h+

Condition differences:

medium:glucose MM?

  • temperature:25-32C
  • medium:glucose MM
 ECO:0007147

competitive growth assay evidence used in manual assertion

PMID:25452419[3]


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed
  2. ↑ 2.0 2.1 2.2 2.3 2.4 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed
  3. ↑ Sideri, T et al. (2014) Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence. G3 (Bethesda) 5 145-55 PubMed
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