Difference between revisions of "OMP ST:3679 ! Schizosaccharomyces pombe sec61delta"

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==Strain Summary==
 
==Strain Summary==
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{|  id="C57e0080a8d787"  class=" tableEdit Strain_info_table" 
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Schizosaccharomyces pombe sec61delta
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Schizosaccharomyces pombe
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*Subspecies and/or strain: sec61delta
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*NCBI Taxonomy ID:4896
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32sec61delta
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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PMID:20473289
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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http://us.bioneer.com/products/spombe/spombeoverview.aspx
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Phenotype Annotation==
 
==Phenotype Annotation==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B57e0080a8f2ba"  class=" tableEdit OMP_annotation_table dataTable" 
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:4390
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OMP:0007461
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abolished viability
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Relative to: OMP_AN:1028
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<hr>Genotype differences:<br>
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+leu1-32/leu1-32sec61delta  -leu1-32/leu1-32 -h+/h+
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<hr>Condition differences:<br>
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:?
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temperature:?25-32C
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PMID:20473289
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|
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|-
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OMP_AN:11584
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OMP:0007461
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nonviable vegetative cell population
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|
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Relative to: OMP_AN:1028
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<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32sec61delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
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|
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PMID:23697806
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|
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|
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|-
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|
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OMP_AN:14287
 +
|
 +
 
 +
|
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OMP:0007726
 +
|
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abolished spore viability
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32sec61delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
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ECO:0001098
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|
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microscopy evidence
 +
|
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PMID:23697806
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|
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|
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|-
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OMP_AN:26760
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|
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OMP:0007802
 +
|
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increased vegeative cell population growth rate
 +
|
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Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32sec61delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
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medium:glucose MM?
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|
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*temperature:25-32C
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*medium:glucose MM
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ECO:0007147
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competitive growth assay evidence used in manual assertion
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PMID:25452419
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Latest revision as of 13:40, 20 June 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe sec61delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: sec61delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32sec61delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:4390

OMP:0007461

abolished viability

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32sec61delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:20473289[1]

OMP_AN:11584

OMP:0007461

nonviable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32sec61delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:23697806[2]

OMP_AN:14287

OMP:0007726

abolished spore viability

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32sec61delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:26760

OMP:0007802

increased vegeative cell population growth rate

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32sec61delta -leu1-32/leu1-32 -h+/h+

Condition differences:

medium:glucose MM?

  • temperature:25-32C
  • medium:glucose MM
 ECO:0007147

competitive growth assay evidence used in manual assertion

PMID:25452419[3]


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
  3. ↑ Sideri, T et al. (2014) Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence. G3 (Bethesda) 5 145-55 PubMed OMPwiki page
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