Difference between revisions of "OMP ST:2580 ! Schizosaccharomyces pombe alm1delta"

Latest revision as of 14:53, 11 April 2018

Strain Name	Schizosaccharomyces pombe alm1delta
Synonyms
Taxon Information	Pangenome: Schizosaccharomyces pombe Subspecies and/or strain: alm1delta NCBI Taxonomy ID:4896
Genotype	ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 alm1delta
Strain Reference	PMID:20473289^[1]
Strain availability	http://us.bioneer.com/products/spombe/spombeoverview.aspx
Ancestry	parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
Annotated phenotypes
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Annotation ID	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension
OMP_AN:3029	OMP:0007460	viable vegetative cell population	Relative to: OMP_AN:1028 Genotype differences: +alm1delta -h+/h+ Condition differences: medium:YES?	temperature:25-32C medium:YES	ECO:0001098	microscopy evidence	PMID:20473289^[1]
OMP_AN:8638	OMP:0007460	viable vegetative cell population	Relative to: OMP_AN:1028 Genotype differences: +alm1delta -h+/h+ Condition differences: ? temperature:?25-32C				PMID:23697806^[2]
OMP_AN:14968	OMP:0007714	curving vegetative cell	Relative to: OMP_AN:1028 Genotype differences: +alm1delta -h+/h+ Condition differences: medium:YES?	medium:YES temperature:25-32C	ECO:0001098	microscopy evidence	PMID:23697806^[2]	has_penetrance: FYPO_EXT:0000001 high has_penetrance: FYPO_EXT:0000003 low
OMP_AN:15002	OMP:0007716	viable vegetative cell	Relative to: OMP_AN:1028 Genotype differences: +alm1delta -h+/h+ Condition differences: medium:YES?	temperature:25-32C medium:YES	ECO:0001098	microscopy evidence	PMID:23697806^[2]	has_penetrance: FYPO_EXT:0000001 high has_penetrance: FYPO_EXT:0000003 low
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See Help:References for how to manage references in OMPwiki.

↑ ^1.0 ^1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
↑ ^2.0 ^2.1 ^2.2 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page

@@ Line 74: / Line 74: @@
 OMP:0007460
 |
-viable cell
+viable vegetative cell population
 |
 Relative to: OMP_AN:1028
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32alm1delta  -leu1-32/leu1-32 -h+/h+
++alm1delta  -h+/h+
 <hr>Condition differences:<br>
-no differences
+medium:YES?
 |
+*temperature:25-32C
+*medium:YES
 |
+ECO:0001098
 |
+microscopy evidence
 |
 PMID:20473289
@@ Line 107: / Line 108: @@
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32alm1delta  -leu1-32/leu1-32 -h+/h+
++alm1delta  -h+/h+
 <hr>Condition differences:<br>
-no differences
+:?
+temperature:?25-32C
 |
@@ Line 130: / Line 132: @@
 OMP:0007714
 |
-curving of vegetative cell
+curving vegetative cell
 |
 Relative to: OMP_AN:1028
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32alm1delta  -leu1-32/leu1-32 -h+/h+
++alm1delta  -h+/h+
 <hr>Condition differences:<br>
-no differences
+medium:YES?
 |
+*medium:YES
+*temperature:25-32C
 |
 ECO:0001098
@@ Line 147: / Line 150: @@
 PMID:23697806
 |
+has_penetrance: FYPO_EXT:0000001 high
+has_penetrance: FYPO_EXT:0000003 low
 |
@@ Line 163: / Line 167: @@
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32alm1delta  -leu1-32/leu1-32 -h+/h+
++alm1delta  -h+/h+
 <hr>Condition differences:<br>
-no differences
+medium:YES?
 |
+*temperature:25-32C
+*medium:YES
 |
 ECO:0001098
@@ Line 175: / Line 180: @@
 PMID:23697806
 |
+has_penetrance: FYPO_EXT:0000001 high
+has_penetrance: FYPO_EXT:0000003 low
 |