Difference between revisions of "OMP ST:2010 ! Schizosaccharomyces pombe sgt1delta"

Latest revision as of 13:54, 26 February 2018

Strain Name	Schizosaccharomyces pombe sgt1delta
Synonyms
Taxon Information	Pangenome: Schizosaccharomyces pombe Subspecies and/or strain: sgt1delta NCBI Taxonomy ID:4896
Genotype	ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 sgt1delta
Strain Reference	PMID:20473289^[1]
Strain availability	http://us.bioneer.com/products/spombe/spombeoverview.aspx
Ancestry	parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
Annotated phenotypes
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Annotation ID	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension
OMP_AN:2310	OMP:0007461	nonviable vegetative cell population	Relative to: OMP_AN:1028 Genotype differences: +sgt1delta -h+/h+ Condition differences: ? temperature:?25-32C		ECO:0001098	microscopy evidence	PMID:20473289^[1]
OMP_AN:8344	OMP:0007461	nonviable vegetative cell population	Relative to: OMP_AN:1028 Genotype differences: +sgt1delta -h+/h+ Condition differences: no differences	temperature:25-32C	ECO:0001098		PMID:23697806^[2]
OMP_AN:13373	OMP:0007728	altered mitotic cell cycle	Relative to: OMP_AN:1028 Genotype differences: +sgt1delta -h+/h+ Condition differences: no differences	temperature:25-32C	ECO:0001098	microscopy evidence	PMID:23697806^[2]
OMP_AN:14445	OMP:0007725	inviable after spore germination	Relative to: OMP_AN:1028 Genotype differences: +sgt1delta -h+/h+ Condition differences: no differences	temperature:25-32C	ECO:0001098	microscopy evidence	PMID:23697806^[2]	has_penetrance: FYPO_EXT:0000001 high
OMP_AN:14555	OMP:0007740	elongated spore germ tube	Relative to: OMP_AN:1028 Genotype differences: +sgt1delta -h+/h+ Condition differences: no differences	temperature:25-32C	ECO:0001098	microscopy evidence	PMID:23697806^[2]	has_penetrance: FYPO_EXT:0000001 high
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See Help:References for how to manage references in OMPwiki.

↑ ^1.0 ^1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
↑ ^2.0 ^2.1 ^2.2 ^2.3 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page

@@ Line 74: / Line 74: @@
 OMP:0007461
 |
-abolished viability
+nonviable vegetative cell population
 |
 Relative to: OMP_AN:1028
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32sgt1delta  -leu1-32/leu1-32 -h+/h+
++sgt1delta  -h+/h+
 <hr>Condition differences:<br>
-no differences
+:?
+temperature:?25-32C
 |
 |
+ECO:0001098
 |
+microscopy evidence
 |
 PMID:20473289
@@ Line 107: / Line 108: @@
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32sgt1delta  -leu1-32/leu1-32 -h+/h+
++sgt1delta  -h+/h+
 <hr>Condition differences:<br>
 no differences
 |
+temperature:25-32C
 |
+ECO:0001098
 |
@@ Line 135: / Line 136: @@
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32sgt1delta  -leu1-32/leu1-32 -h+/h+
++sgt1delta  -h+/h+
 <hr>Condition differences:<br>
 no differences
 |
+temperature:25-32C
 |
 ECO:0001098
@@ Line 163: / Line 164: @@
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32sgt1delta  -leu1-32/leu1-32 -h+/h+
++sgt1delta  -h+/h+
 <hr>Condition differences:<br>
 no differences
 |
+temperature:25-32C
 |
 ECO:0001098
@@ Line 175: / Line 176: @@
 PMID:23697806
 |
+has_penetrance: FYPO_EXT:0000001 high
 |
@@ Line 191: / Line 192: @@
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32sgt1delta  -leu1-32/leu1-32 -h+/h+
++sgt1delta  -h+/h+
 <hr>Condition differences:<br>
 no differences
 |
+temperature:25-32C
 |
 ECO:0001098
@@ Line 203: / Line 204: @@
 PMID:23697806
 |
+has_penetrance: FYPO_EXT:0000001 high
 |