Difference between revisions of "OMP ST:2010 ! Schizosaccharomyces pombe sgt1delta"

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==Strain Summary==
 
==Strain Summary==
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{|  id="K57e00465e4abc"  class=" tableEdit Strain_info_table" 
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Schizosaccharomyces pombe sgt1delta
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Schizosaccharomyces pombe
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*Subspecies and/or strain: sgt1delta
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*NCBI Taxonomy ID:4896
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 sgt1delta
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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PMID:20473289
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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http://us.bioneer.com/products/spombe/spombeoverview.aspx
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Phenotype Annotation==
 
==Phenotype Annotation==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K57e00465e668e"  class=" tableEdit OMP_annotation_table dataTable" 
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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|-
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OMP_AN:2310
 +
|
 +
 
 +
|
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OMP:0007461
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|
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nonviable vegetative cell population
 +
|
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Relative to: OMP_AN:1028
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<hr>Genotype differences:<br>
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+sgt1delta  -h+/h+
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<hr>Condition differences:<br>
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:?
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temperature:?25-32C
 +
|
 +
 
 +
|
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ECO:0001098
 +
|
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microscopy evidence
 +
|
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PMID:20473289
 +
|
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 +
|
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 +
|-
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|
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OMP_AN:8344
 +
|
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 +
|
 +
OMP:0007461
 +
|
 +
nonviable vegetative cell population
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+sgt1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
temperature:25-32C
 +
|
 +
ECO:0001098
 +
|
 +
 
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:13373
 +
|
 +
 
 +
|
 +
OMP:0007728
 +
|
 +
altered mitotic cell cycle
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+sgt1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
temperature:25-32C
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:14445
 +
|
 +
 
 +
|
 +
OMP:0007725
 +
|
 +
inviable after spore germination
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+sgt1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
temperature:25-32C
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:14555
 +
|
 +
 
 +
|
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OMP:0007740
 +
|
 +
elongated spore germ tube
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+sgt1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
temperature:25-32C
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
 +
 
 +
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Latest revision as of 13:54, 26 February 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe sgt1delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: sgt1delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 sgt1delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:2310

OMP:0007461

nonviable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+sgt1delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:20473289[1]

OMP_AN:8344

OMP:0007461

nonviable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+sgt1delta -h+/h+

Condition differences:

no differences

temperature:25-32C

ECO:0001098

PMID:23697806[2]

OMP_AN:13373

OMP:0007728

altered mitotic cell cycle

Relative to: OMP_AN:1028

Genotype differences:

+sgt1delta -h+/h+

Condition differences:

no differences

temperature:25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:14445

OMP:0007725

inviable after spore germination

Relative to: OMP_AN:1028

Genotype differences:

+sgt1delta -h+/h+

Condition differences:

no differences

temperature:25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000001 high

OMP_AN:14555

OMP:0007740

elongated spore germ tube

Relative to: OMP_AN:1028

Genotype differences:

+sgt1delta -h+/h+

Condition differences:

no differences

temperature:25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000001 high


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
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