Difference between revisions of "OMP ST:2887 ! Schizosaccharomyces pombe rfc3delta"

From OMPwiki
(Page creation by DemoMaint)
 
(touch)
 
(9 intermediate revisions by 2 users not shown)
Line 2: Line 2:
  
 
==Strain Summary==
 
==Strain Summary==
−
<newTableEdit>
+
<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.10497.O57e0064fb105a-->
−
Template:Strain_info_table
+
<!--
−
</newTableEdit>
+
******************************************************************************************
 +
*
 +
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 +
*
 +
****************************************************************************************** -->
 +
{|  id="O57e0064fb105a"  class=" tableEdit Strain_info_table" 
 +
 
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 +
||
 +
Schizosaccharomyces pombe rfc3delta
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 +
||
 +
 
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 +
||
 +
*Pangenome: Schizosaccharomyces pombe
 +
*Subspecies and/or strain: rfc3delta
 +
*NCBI Taxonomy ID:4896
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 +
||
 +
ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32rfc3delta
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 +
||
 +
PMID:20473289
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 +
||
 +
http://us.bioneer.com/products/spombe/spombeoverview.aspx
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 +
||
 +
parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 +
||
 +
 
 +
 
 +
|- class="tableEdit_footer"
 +
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.10497.O57e0064fb105a&page=10497&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
 +
|}
 +
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.10497.O57e0064fb105a--></protect>
  
  
Line 11: Line 56:
  
 
==Phenotype Annotation==
 
==Phenotype Annotation==
−
<newTableEdit>
+
<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.10497.M57e0064fb2c18-->
−
Template:OMP_annotation_table
+
<!--
−
</newTableEdit>
+
******************************************************************************************
 +
*
 +
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 +
*
 +
****************************************************************************************** -->
 +
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M57e0064fb2c18"  class=" tableEdit OMP_annotation_table dataTable" 
 +
|- align='left' bgcolor='#CCCCFF'
 +
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:3413
 +
|
 +
 
 +
|
 +
OMP:0007461
 +
|
 +
abolished viability
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32rfc3delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:20473289
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:9503
 +
|
 +
 
 +
|
 +
OMP:0007461
 +
|
 +
nonviable vegetative cell population
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32rfc3delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:18318
 +
|
 +
NOT
 +
|
 +
OMP:0007713
 +
|
 +
altered vegetative cell size
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32rfc3delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:18712
 +
|
 +
 
 +
|
 +
OMP:0007718
 +
|
 +
abolished viability of vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32rfc3delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:18838
 +
|
 +
 
 +
|
 +
OMP:0007708
 +
|
 +
altered vegetative cell shape
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32rfc3delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
 
 +
|- class="tableEdit_footer"
 +
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.10497.M57e0064fb2c18&page=10497&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
 +
|}
 +
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.10497.M57e0064fb2c18--></protect>
  
  

Latest revision as of 13:14, 1 February 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe rfc3delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: rfc3delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32rfc3delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:3413

OMP:0007461

abolished viability

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32rfc3delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

PMID:20473289[1]

OMP_AN:9503

OMP:0007461

nonviable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32rfc3delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

PMID:23697806[2]

OMP_AN:18318

NOT

OMP:0007713

altered vegetative cell size

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32rfc3delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:18712

OMP:0007718

abolished viability of vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32rfc3delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:18838

OMP:0007708

altered vegetative cell shape

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32rfc3delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=OMP_ST:2887_!_Schizosaccharomyces_pombe_rfc3delta&oldid=72195"