Difference between revisions of "OMP ST:5276 ! Schizosaccharomyces pombe rng3delta"

From OMPwiki
(touch)
(touch)
 
(12 intermediate revisions by 2 users not shown)
Line 13: Line 13:
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 +
||
 +
Schizosaccharomyces pombe rng3delta
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 +
||
 +
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 +
||
 +
*Pangenome: Schizosaccharomyces pombe
 +
*Subspecies and/or strain: rng3delta
 +
*NCBI Taxonomy ID:4896
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 +
||
 +
ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 rng3delta
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 +
||
 +
PMID:20473289
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 +
||
 +
http://us.bioneer.com/products/spombe/spombeoverview.aspx
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 +
||
 +
parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 +
||
 +
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  
−
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.12886.H57e00b8fe2a60&page=12886&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div>
+
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.12886.H57e00b8fe2a60&page=12886&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
 
|}
 
|}
−
<noinclude>
 
−
<!-- OMP category tags -->
 
−
</noinclude>
 
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.12886.H57e00b8fe2a60--></protect>
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.12886.H57e00b8fe2a60--></protect>
  
Line 50: Line 65:
 
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R57e00b8fe46d2"  class=" tableEdit OMP_annotation_table dataTable"   
 
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R57e00b8fe46d2"  class=" tableEdit OMP_annotation_table dataTable"   
 
|- align='left' bgcolor='#CCCCFF'
 
|- align='left' bgcolor='#CCCCFF'
−
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
+
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:6448
 +
|
 +
 
 +
|
 +
OMP:0007461
 +
|
 +
abolished viability
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+rng3delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:20473289
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:12811
 +
|
 +
 
 +
|
 +
OMP:0007461
 +
|
 +
nonviable vegetative cell population
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+rng3delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:13821
 +
|
 +
 
 +
|
 +
OMP:0007728
 +
|
 +
altered mitotic cell cycle
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+rng3delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:14553
 +
|
 +
 
 +
|
 +
OMP:0007725
 +
|
 +
inviable after spore germination
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+rng3delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:14663
 +
|
 +
 
 +
|
 +
OMP:0007740
 +
|
 +
elongated spore germ tube
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+rng3delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:14671
 +
|
 +
 
 +
|
 +
OMP:0007740
 +
|
 +
elongated spore germ tube
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+rng3delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:14678
 +
|
 +
 
 +
|
 +
OMP:0007725
 +
|
 +
inviable after spore germination
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+rng3delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:14685
 +
|
 +
 
 +
|
 +
OMP:0007742
 +
|
 +
presence of vegetative cell lysis
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+rng3delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  
 
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.12886.R57e00b8fe46d2&page=12886&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
 
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.12886.R57e00b8fe46d2&page=12886&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
 
|}
 
|}
−
<noinclude>
 
−
<!-- OMP category tags -->
 
−
</noinclude>
 
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.12886.R57e00b8fe46d2--></protect>
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.12886.R57e00b8fe46d2--></protect>
  

Latest revision as of 12:20, 11 January 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe rng3delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: rng3delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 rng3delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:6448

OMP:0007461

abolished viability

Relative to: OMP_AN:1028

Genotype differences:

+rng3delta -h+/h+

Condition differences:

no differences

PMID:20473289[1]

OMP_AN:12811

OMP:0007461

nonviable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+rng3delta -h+/h+

Condition differences:

no differences

PMID:23697806[2]

OMP_AN:13821

OMP:0007728

altered mitotic cell cycle

Relative to: OMP_AN:1028

Genotype differences:

+rng3delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:14553

OMP:0007725

inviable after spore germination

Relative to: OMP_AN:1028

Genotype differences:

+rng3delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:14663

OMP:0007740

elongated spore germ tube

Relative to: OMP_AN:1028

Genotype differences:

+rng3delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:14671

OMP:0007740

elongated spore germ tube

Relative to: OMP_AN:1028

Genotype differences:

+rng3delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:14678

OMP:0007725

inviable after spore germination

Relative to: OMP_AN:1028

Genotype differences:

+rng3delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:14685

OMP:0007742

presence of vegetative cell lysis

Relative to: OMP_AN:1028

Genotype differences:

+rng3delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=OMP_ST:5276_!_Schizosaccharomyces_pombe_rng3delta&oldid=68036"