Difference between revisions of "OMP ST:8631 ! Bacillus subtilis 168 CAG74623"

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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
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Bacillus subtilis 168 CAG74623
 
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Bacillus subtilis
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*Subspecies and/or strain: 168
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*NCBI Taxonomy ID: NCBI Taxon ID: 224308
 
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
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trpC2 lacA::Pxyl-dcas9(ErmR) amyE::Pveg-sgRNA_ydiP(CmR)
 
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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PMID:27238023
 
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent:OMP ST:796 ! Bacillus subtilis 168
 
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:13245
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OMP:0005342
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increased cell lysis
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Relative to: OMP_AN:13098
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<hr>Genotype differences:<br>
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+lacA +amyE
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<hr>Condition differences:<br>
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no differences
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*temperature:37C
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*medium:LB medium
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ECO:0001232
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microscopy evidence used in manual assertion
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PMID:27238023
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is_a OMP:0007682 Terminal Phenotype
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|-
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OMP_AN:13246
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OMP:0007599
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abolished population growth
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Relative to: OMP_AN:13216
 +
 +
<hr>Genotype differences:<br>
 +
+lacA +amyE
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
|
 +
ECO:0001232
 +
|
 +
microscopy evidence used in manual assertion
 +
|
 +
PMID:27238023
 +
|
 +
is_a OMP:0007682 Terminal Phenotype
 +
|
 +
 +
|-
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OMP_AN:13247
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 +
 +
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OMP:0007667
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filamenting cell shape
 +
|
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Relative to: OMP_AN:13045
 +
 +
<hr>Genotype differences:<br>
 +
+lacA +amyE
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
|
 +
ECO:0001232
 +
|
 +
microscopy evidence used in manual assertion
 +
|
 +
PMID:27238023
 +
|
 +
is_a OMP:0007682 Terminal Phenotype
 +
|
 +
  
 
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Latest revision as of 11:41, 30 November 2017

Strain Summary

Strain Name

Bacillus subtilis 168 CAG74623

Synonyms
Taxon Information
  • Pangenome: Bacillus subtilis
  • Subspecies and/or strain: 168
  • NCBI Taxonomy ID: NCBI Taxon ID: 224308
Genotype

trpC2 lacA::Pxyl-dcas9(ErmR) amyE::Pveg-sgRNA_ydiP(CmR)

Strain Reference

PMID:27238023[1]

Strain availability
Ancestry

parent:OMP ST:796 ! Bacillus subtilis 168

Annotated phenotypes


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Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:13245

OMP:0005342

increased cell lysis

Relative to: OMP_AN:13098

Genotype differences:

+lacA +amyE

Condition differences:

no differences

  • temperature:37C
  • medium:LB medium
 ECO:0001232

microscopy evidence used in manual assertion

PMID:27238023[1]

is_aOMP:0007682 Terminal Phenotype

OMP_AN:13246

OMP:0007599

abolished population growth

Relative to: OMP_AN:13216

Genotype differences:

+lacA +amyE

Condition differences:

no differences

  • temperature:37C
  • medium:LB medium
 ECO:0001232

microscopy evidence used in manual assertion

PMID:27238023[1]

is_aOMP:0007682 Terminal Phenotype

OMP_AN:13247

OMP:0007667

filamenting cell shape

Relative to: OMP_AN:13045

Genotype differences:

+lacA +amyE

Condition differences:

no differences

  • temperature:37C
  • medium:LB medium
 ECO:0001232

microscopy evidence used in manual assertion

PMID:27238023[1]

is_aOMP:0007682 Terminal Phenotype


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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 1.2 1.3 Peters, JM et al. (2016) A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria. Cell 165 1493-1506 PubMed OMPwiki page
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