Difference between revisions of "OMP ST:796 ! Bacillus subtilis 168"

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!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
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*temperature:37C
 
*temperature:37C
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*medium:[[Lactate minimal medium of Donnellan,Nags, and Levinson| lactate minimal medium]]
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*medium:lactate minimal medium
 
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ECO:0000182
 
ECO:0000182
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pigmented colony morphology on minimal media
 
pigmented colony morphology on minimal media
  
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[[Lactate minimal medium of Donnellan,Nags, and Levinson| lactate minimal medium]]
 
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PMID:3934335
 
PMID:3934335
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:13022
 +
|
 +
NOT
 +
|
 +
OMP:0007083
 +
|
 +
altered cell size
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
|
 +
 +
|
 +
 +
|
 +
PMID:27238023
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:13045
 +
|
 +
NOT
 +
|
 +
OMP:0007103
 +
|
 +
altered cell morphology
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
|
 +
 +
|
 +
 +
|
 +
PMID:27238023
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:13098
 +
|
 +
 +
|
 +
OMP:0005337
 +
|
 +
absence of cell lysis
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
|
 +
 +
|
 +
 +
|
 +
PMID:27238023
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:13099
 +
|
 +
 +
|
 +
OMP:0007392
 +
|
 +
viable cell
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
|
 +
 +
|
 +
 +
|
 +
PMID:27238023
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:13216
 +
|
 +
 +
|
 +
OMP:0007595
 +
|
 +
presence of population growth
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
|
 +
 +
|
 +
 +
|
 +
PMID:27238023
 
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Latest revision as of 13:11, 21 November 2017

Strain Summary

Strain Name

168

Synonyms

subtilis 168

Taxon Information
  • Pangenome: Bacillus subtilis
  • Subspecies and/or strain: Taxon: 168
  • NCBI Taxonomy ID: NCBI Taxon ID: 224308
Genotype

trpC2

Strain Reference

PMID:4986704[1]

Strain availability

Bacillus Genetic Stock Center

Ancestry

parent:Bacillus subtilis Marburg

Annotated phenotypes


edit table

Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:107

OMP:0000017

presence of endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:liquid sporulation medium[2]
 ECO:0001098

microscopy evidence

PMID:4972256[3]

requires indole or tryptophan for growth

OMP_AN:147

OMP:0000017

presence of endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

 ECO:0000182

in vitro culture assay evidence

PMID:4633157[4]

colony morphology on sporulation medium

OMP_AN:241

OMP:0000017

presence of endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:shaking
  • temperature:37C
  • medium:hydrolyzed casein and inorganic ions
 ECO:0000182

in vitro culture assay evidence

PMID:4625072[5]

OMP_AN:243

OMP:0000017

presence of endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:lactate minimal medium
 ECO:0000182

in vitro culture assay evidence

PMID:4197271[6]

pigmented colony morphology on minimal media

lactate minimal medium

OMP_AN:247

OMP:0000017

presence of endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:hydrolyzed casein
 ECO:0001098

microscopy evidence

other:[7]

OMP_AN:373

OMP:0000017

presence of endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:100 rpm gyratory shaking
  • pH:7
  • temperature:37C
  • medium:Difco nutrient broth[8]
 ECO:0001098

microscopy evidence

PMID:1900505[9]

FeCL2 omitted from medium

OMP_AN:387

OMP:0000017

presence of endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:nutrient broth sporulation medium
 ECO:0000182

in vitro culture assay evidence

PMID:108357[10]

OMP_AN:389

OMP:0000017

presence of endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

 ECO:0000182

in vitro culture assay evidence

PMID:3934335[11]

OMP_AN:13022

NOT

OMP:0007083

altered cell size

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium

PMID:27238023[12]

OMP_AN:13045

NOT

OMP:0007103

altered cell morphology

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium

PMID:27238023[12]

OMP_AN:13098

OMP:0005337

absence of cell lysis

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium

PMID:27238023[12]

OMP_AN:13099

OMP:0007392

viable cell

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium

PMID:27238023[12]

OMP_AN:13216

OMP:0007595

presence of population growth

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium

PMID:27238023[12]


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Michel, JF & Millet, J (1970) Physiological studies on early-blocked sporulation mutants of Bacillus subtilis. J. Appl. Bacteriol. 33 220-7 PubMed OMPwiki page
  2. ↑ Warren, SC (1968) Sporulation in Bacillus subtilis. Biochemical changes. Biochem. J. 109 811-8 PubMed OMPwiki page
  3. ↑ Kay, D & Warren, SC (1968) Sporulation in Bacillus subtilis. Morphological changes. Biochem. J. 109 819-24 PubMed OMPwiki page
  4. ↑ Hoch, JA & Mathews, JL (1973) Chromosomal location of pleiotropic negative sporulation mutations in Bacillus subtilis. Genetics 73 215-28 PubMed OMPwiki page
  5. ↑ Coote, JG (1972) Sporulation in Bacillus subtilis. Characterization of oligosporogenous mutants and comparison of their phenotypes with those of asporogenous mutants. J. Gen. Microbiol. 71 1-15 PubMed OMPwiki page
  6. ↑ Piggot, PJ (1973) Mapping of asporogenous mutations of Bacillus subtilis: a minimum estimate of the number of sporeulation operons. J. Bacteriol. 114 1241-53 PubMed OMPwiki page
  7. ↑ Jenkinson HF. Germination and resistance defects in spores of a Bacillus subtilis mutant lacking a coat polypeptide. J Gen Microbiol. 1981;127: 81-91
  8. ↑ Leighton, TJ & Doi, RH (1971) The stability of messenger ribonucleic acid during sporulation in Bacillus subtilis. J. Biol. Chem. 246 3189-95 PubMed OMPwiki page
  9. ↑ Mysliwiec, TH et al. (1991) The Bacillus subtilis spo0J gene: evidence for involvement in catabolite repression of sporulation. J. Bacteriol. 173 1911-9 PubMed OMPwiki page
  10. ↑ Balassa, G et al. (1979) A Bacillus subtilis mutant requiring dipicolinic acid for the development of heat-resistant spores. J. Gen. Microbiol. 110 365-79 PubMed OMPwiki page
  11. ↑ James, W & Mandelstam, J (1985) spoVIC, a new sporulation locus in Bacillus subtilis affecting spore coats, germination and the rate of sporulation. J. Gen. Microbiol. 131 2409-19 PubMed OMPwiki page
  12. ↑ 12.0 12.1 12.2 12.3 12.4 Peters, JM et al. (2016) A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria. Cell 165 1493-1506 PubMed OMPwiki page
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