Difference between revisions of "OMP ST:6326 ! Escherichia coli UPEC CFT073"

Latest revision as of 14:34, 30 November 2016

Strain Summary

Strain Name	Escherichia coli UPEC CFT073
Synonyms
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: UPEC NCBI Taxonomy ID: 199310
Genotype
Strain Reference
Strain availability	ATCC 700928
Ancestry
Annotated phenotypes
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Notes

Phenotype Annotation

Annotation ID	not	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:7515		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:p(PfliC)-lux temperature:37C medium:0.4% glucose medium:M9 minimal medium	ECO:0000049	reporter gene assay evidence	PMID:21821749^[1]	UniProtKB:A0A0H2VAE3
OMP_AN:7516		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7515 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)?	other:p(PfliC)-lux temperature:37C medium:0.4% glucose medium:M9 minimal medium medium:cPACs (0.1 mg/mL)	ECO:0000049	reporter gene assay evidence	PMID:21821749^[1]	UniProtKB:A0A0H2VAE3 CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
OMP_AN:7517		OMP:0000029	presence of flagellum	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth	ECO:0005033	electron microscopy evidence	PMID:21821749^[1]
OMP_AN:7518		OMP:0000215	decreased number of flagella	Relative to: OMP_AN:7517 Genotype differences: no differences Condition differences: medium:CP (10 mg/mL)?	temperature:37C medium:CP (10 mg/mL) medium:LB broth	ECO:0005033	electron microscopy evidence	PMID:21821749^[1]	NCBI Taxonomy ID:13750 cranberry powder (CP)
OMP_AN:7519		OMP:0000111	presence of cell motility by swimming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:21821749^[1]
OMP_AN:7520		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)?	temperature:37C medium:cPACs (0.1 mg/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:21821749^[1]	CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
OMP_AN:7521		OMP:0006100	abolished cell motility by swimming	Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)?	temperature:37C medium:>= CP (10 mg/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:21821749^[1]	NCBI Taxonomy ID:13750 cranberry powder (CP)
OMP_AN:7522		OMP:0000067	presence of cell motility by swarming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:21821749^[1]
OMP_AN:7523		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)?	temperature:37C medium:cPACs (0.1 mg/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:21821749^[1]	CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
OMP_AN:7524		OMP:0006167	abolished cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)?	temperature:37C medium:>= CP (10 mg/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:21821749^[1]	NCBI Taxonomy ID:13750 cranberry powder (CP)
OMP_AN:7525		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:p(PfliC)-lux temperature:37C medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802^[2]	UniProtKB:A0A0H2VAE3
OMP_AN:7526		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PG (1%)?	other:p(PfliC)-lux temperature:37C medium:>= PG (1%) medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802^[2]	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7527		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGP (1%)?	other:p(PfliC)-lux temperature:37C medium:>= PGP (1%) medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802^[2]	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7528		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGRE (1%)?	other:p(PfliC)-lux temperature:37C medium:>= PGRE (1%) medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802^[2]	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7529		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802^[2]	UniProtKB:A0A0H2VAE3
OMP_AN:7530		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PGRE (5%)?	temperature:37C medium:>= PGRE (5%) medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802^[2]	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7531		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PG (10%)?	temperature:37C medium:>= PG (10%) medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802^[2]	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7532		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PGP (10%)?	temperature:37C medium:>= PGP (10%) medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802^[2]	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7534		OMP:0000111	presence of cell motility by swimming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:30C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802^[2]
OMP_AN:7535		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)?	temperature:30C medium:>= PGRE (10%) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802^[2]	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7536		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: medium:>= PG (10%)?	temperature:30C medium:>= PG (10%) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802^[2]	NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7537		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: no differences	temperature:30C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802^[2]	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7538		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7571 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)?	temperature:37C medium:>= PGRE (10%) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:22708802^[2]	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7539		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7571 Genotype differences: no differences Condition differences: medium:>= PG (10%)?	temperature:37C medium:>= PG (10%) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:22708802^[2]	NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7540		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7571 Genotype differences: no differences Condition differences: medium:>= PGP (10%)?	temperature:37C medium:>= PGP (10%) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:22708802^[2]	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7541		OMP:0000215	decreased number of flagella	Relative to: OMP_AN:7569 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)?	temperature:37C medium:>= PGRE (10%) medium:LB broth	ECO:0005803	motility assay evidence	PMID:22708802^[2]	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7543		OMP:0000176	biofilm phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:96 well plate temperature:37C medium:LB broth			PMID:25391152^[3]
OMP_AN:7544		OMP:0007020	increased biofilm formation	Relative to: OMP_AN:7543 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)?	other:96 well plate temperature:37C medium:>= RES (0.5 ug/mL) medium:LB broth			PMID:25391152^[3]	CHEBI:28487 Reserpine (RES)
OMP_AN:7545		OMP:0007020	increased biofilm formation	Relative to: OMP_AN:7543 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)?	other:96 well plate temperature:37C medium:>= PIP (5 ug/mL) medium:LB broth			PMID:25391152^[3]	CHEBI:28821 Piperine (PIP)
OMP_AN:7546		OMP:0007020	increased biofilm formation	Relative to: OMP_AN:7552 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	other:Polystyrene tubes temperature:37C medium:>= PIP (0.5 ug/mL) medium:LB broth			PMID:25391152^[3]	CHEBI:28821 Piperine (PIP)
OMP_AN:7547		OMP:0007020	increased biofilm formation	Relative to: OMP_AN:7552 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)?	other:Polystyrene tubes temperature:37C medium:>= RES (0.5 ug/mL) medium:LB broth			PMID:25391152^[3]	CHEBI:28487 Reserpine (RES)
OMP_AN:7548		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7570 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	temperature:37C medium:>= PIP (0.5 ug/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:25391152^[3]	CHEBI:28821 Piperine (PIP)
OMP_AN:7549		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7570 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)?	temperature:37C medium:>= RES (0.5 ug/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:25391152^[3]	CHEBI:28487 Reserpine (RES)
OMP_AN:7550		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7572 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)?	temperature:37C medium:>= PIP (5 ug/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:25391152^[3]	CHEBI:28821 Piperine (PIP)
OMP_AN:7551	NOT	OMP:0005323	altered cell motility by swarming	Relative to: OMP_AN:7551 Genotype differences: no differences Condition differences: no differences	temperature:37C medium:>= RES (5 ug/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:25391152^[3]	CHEBI:28487 Reserpine (RES)
OMP_AN:7552		OMP:0000176	biofilm phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:Polystyrene tubes temperature:37C medium:LB broth			PMID:25391152^[3]
OMP_AN:7553		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:A0A0H2V815 motA
OMP_AN:7554		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7553 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	temperature:37C medium:>= PIP (0.5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:A0A0H2V815 motA CHEBI:28821 Piperine (PIP)
OMP_AN:7555		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7586 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	temperature:37C medium:>= PIP (0.5 ug/mL) medium:LB broth	ECO:0005803	motility assay evidence	PMID:25391152^[3]	UniProtKB:A0A0H2V9E2 motB CHEBI:28821 Piperine (PIP)
OMP_AN:7556		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7587 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	temperature:37C medium:>= PIP (0.5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:A0A0H2VGH0 fimA CHEBI:28821 Piperine (PIP)
OMP_AN:7557		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7588 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	temperature:37C medium:>= PIP (0.5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:P66797 uvrY CHEBI:28821 Piperine (PIP)
OMP_AN:7558		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7589 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)?	temperature:37C medium:>= PIP (5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:A0A0H2VAE3 fliC CHEBI:28821 Piperine (PIP)
OMP_AN:7559		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7590 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)?	temperature:37C medium:>= PIP (5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:P62608 papA CHEBI:28821 Piperine (PIP)
OMP_AN:7563		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7553 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)?	temperature:37C medium:>= RES (0.5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:A0A0H2V815 motA CHEBI:28487 Reserpine (RES)
OMP_AN:7564		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7586 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)?	temperature:37C medium:>= RES (0.5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:A0A0H2V9E2 motB CHEBI:28487 Reserpine (RES)
OMP_AN:7565		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7587 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)?	temperature:37C medium:>= RES (0.5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:A0A0H2VGH0 fimA CHEBI:28487 Reserpine (RES)
OMP_AN:7566		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7588 Genotype differences: no differences Condition differences: medium:>= RES (5 ug/mL)?	temperature:37C medium:>= RES (5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:P66797 uvrY CHEBI:28487 Reserpine (RES)
OMP_AN:7567		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7590 Genotype differences: no differences Condition differences: medium:>= RES (5 ug/mL)?	temperature:37C medium:>= RES (5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:P62608 papA CHEBI:28487 Reserpine (RES)
OMP_AN:7568	NOT	OMP:0007080	altered gene expression	Relative to: OMP_AN:7589 Genotype differences: no differences Condition differences: medium:>= RES (5 ug/mL)?	temperature:37C medium:>= RES (5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:A0A0H2VAE3 fliC CHEBI:28487 Reserpine (RES)
OMP_AN:7569		OMP:0000029	presence of flagellum	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth	ECO:0005033	electron microscopy evidence	PMID:22708802^[2]
OMP_AN:7570		OMP:0000111	presence of cell motility by swimming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:25391152^[3]
OMP_AN:7571		OMP:0000067	presence of cell motility by swarming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:22708802^[2]
OMP_AN:7572		OMP:0000067	presence of cell motility by swarming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:25391152^[3]
OMP_AN:7586		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:A0A0H2V9E2 motB
OMP_AN:7587		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:A0A0H2VGH0 fimA
OMP_AN:7588		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:P66797 uvrY
OMP_AN:7589		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:A0A0H2VAE3 fliC
OMP_AN:7590		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152^[3]	UniProtKB:P62608 papA
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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Hidalgo, G et al. (2011) Inhibition of Escherichia coli CFT073 fliC expression and motility by cranberry materials. Appl. Environ. Microbiol. 77 6852-7 PubMed OMPwiki page
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 ^2.12 ^2.13 ^2.14 ^2.15 ^2.16 ^2.17 Asadishad, B et al. (2012) Pomegranate materials inhibit flagellin gene expression and flagellar-propelled motility of uropathogenic Escherichia coli strain CFT073. FEMS Microbiol. Lett. 334 87-94 PubMed OMPwiki page
↑ ^3.00 ^3.01 ^3.02 ^3.03 ^3.04 ^3.05 ^3.06 ^3.07 ^3.08 ^3.09 ^3.10 ^3.11 ^3.12 ^3.13 ^3.14 ^3.15 ^3.16 ^3.17 ^3.18 ^3.19 ^3.20 ^3.21 ^3.22 ^3.23 ^3.24 ^3.25 ^3.26 ^3.27 ^3.28 ^3.29 Dusane, DH et al. (2014) Alkaloids modulate motility, biofilm formation and antibiotic susceptibility of uropathogenic Escherichia coli. PLoS ONE 9 e112093 PubMed OMPwiki page

[PMID:21821749-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Hidalgo, G et al. (2011) Inhibition of Escherichia coli CFT073 fliC expression and motility by cranberry materials. Appl. Environ. Microbiol. 77 6852-7 PubMed OMPwiki page

[PMID:22708802-2] 2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 ^2.12 ^2.13 ^2.14 ^2.15 ^2.16 ^2.17 Asadishad, B et al. (2012) Pomegranate materials inhibit flagellin gene expression and flagellar-propelled motility of uropathogenic Escherichia coli strain CFT073. FEMS Microbiol. Lett. 334 87-94 PubMed OMPwiki page

[PMID:25391152-3] 3.00 ^3.01 ^3.02 ^3.03 ^3.04 ^3.05 ^3.06 ^3.07 ^3.08 ^3.09 ^3.10 ^3.11 ^3.12 ^3.13 ^3.14 ^3.15 ^3.16 ^3.17 ^3.18 ^3.19 ^3.20 ^3.21 ^3.22 ^3.23 ^3.24 ^3.25 ^3.26 ^3.27 ^3.28 ^3.29 Dusane, DH et al. (2014) Alkaloids modulate motility, biofilm formation and antibiotic susceptibility of uropathogenic Escherichia coli. PLoS ONE 9 e112093 PubMed OMPwiki page

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Difference between revisions of "OMP ST:6326 ! Escherichia coli UPEC CFT073"

Latest revision as of 14:34, 30 November 2016

Contents

Strain Summary

Notes

Phenotype Annotation

Additional Information

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References

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@@ Line 157: / Line 157: @@
 electron microscopy evidence
 |
-*PMID:21821749
+PMID:21821749
-*PMID:22708802
 |
@@ Line 217: / Line 216: @@
 motility assay evidence
 |
-*PMID:21821749
+PMID:21821749
-*PMID:25391152
 |
@@ Line 307: / Line 305: @@
 motility assay evidence
 |
-*PMID:21821749
+PMID:21821749
-*PMID:22708802
-*PMID:25391152
 |
@@ Line 752: / Line 748: @@
 decreased cell motility by swarming
 |
-Relative to: OMP_AN:7522
+Relative to: OMP_AN:7571
 <hr>Genotype differences:<br>
@@ Line 782: / Line 778: @@
 decreased cell motility by swarming
 |
-Relative to: OMP_AN:7522
+Relative to: OMP_AN:7571
 <hr>Genotype differences:<br>
@@ Line 812: / Line 808: @@
 decreased cell motility by swarming
 |
-Relative to: OMP_AN:7522
+Relative to: OMP_AN:7571
 <hr>Genotype differences:<br>
@@ Line 842: / Line 838: @@
 decreased number of flagella
 |
-Relative to: OMP_AN:7517
+Relative to: OMP_AN:7569
 <hr>Genotype differences:<br>
@@ Line 879: / Line 875: @@
 Nothing to compare<br/>
 |
+*other:96 well plate
 *temperature:37C
 *medium:LB broth
@@ Line 890: / Line 887: @@
 |
-A 96 well plate was used for biofilm formation
 |-
 |
@@ Line 908: / Line 905: @@
 medium:>= RES (0.5 ug/mL)?
 |
+*other:96 well plate
 *temperature:37C
 *medium:>= RES (0.5 ug/mL)
@@ Line 920: / Line 918: @@
 CHEBI:28487 Reserpine (RES)
 |
-A 96 well plate was used to allow for biofilm formation
 |-
 |
@@ Line 938: / Line 936: @@
 medium:>= PIP (5 ug/mL)?
 |
+*other:96 well plate
 *temperature:37C
 *medium:>= PIP (5 ug/mL)
@@ Line 950: / Line 949: @@
 CHEBI:28821 Piperine (PIP)
 |
-A 96 well plate was used to allow for biofilm formation
 |-
 |
@@ Line 961: / Line 960: @@
 increased biofilm formation
 |
-Relative to: OMP_AN:7543
+Relative to: OMP_AN:7552
 <hr>Genotype differences:<br>
@@ Line 968: / Line 967: @@
 medium:>= PIP (0.5 ug/mL)?
 |
+*other:Polystyrene tubes
 *temperature:37C
 *medium:>= PIP (0.5 ug/mL)
@@ Line 980: / Line 980: @@
 CHEBI:28821 Piperine (PIP)
 |
-Polystyrene tubes were used to allow for biofilm formation
 |-
 |
@@ Line 991: / Line 991: @@
 increased biofilm formation
 |
-Relative to: OMP_AN:7543
+Relative to: OMP_AN:7552
 <hr>Genotype differences:<br>
 no differences
 <hr>Condition differences:<br>
-medium:>= RES (0.5 ug/mL0?
+medium:>= RES (0.5 ug/mL)?
 |
+*other:Polystyrene tubes
 *temperature:37C
-*medium:>= RES (0.5 ug/mL0
+*medium:>= RES (0.5 ug/mL)
 *medium:LB broth
 |
@@ Line 1,010: / Line 1,011: @@
 CHEBI:28487 Reserpine (RES)
 |
-Polystyrene tubes were used to allow for biofilm formation
 |-
 |
@@ Line 1,021: / Line 1,022: @@
 decreased cell motility by swimming
 |
-Relative to: OMP_AN:7519
+Relative to: OMP_AN:7570
 <hr>Genotype differences:<br>
@@ Line 1,051: / Line 1,052: @@
 decreased cell motility by swimming
 |
-Relative to: OMP_AN:7519
+Relative to: OMP_AN:7570
 <hr>Genotype differences:<br>
@@ Line 1,081: / Line 1,082: @@
 decreased cell motility by swarming
 |
-Relative to: OMP_AN:7522
+Relative to: OMP_AN:7572
 <hr>Genotype differences:<br>
@@ Line 1,111: / Line 1,112: @@
 altered cell motility by swarming
 |
-Relative to: OMP_AN:7522
+Relative to: OMP_AN:7551
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+no differences
+|
+*temperature:37C
+*medium:>= RES (5 ug/mL)
+*medium:swarming motility medium
+|
+ECO:0005803
+|
+motility assay evidence
+|
+PMID:25391152
+|
+CHEBI:28487 Reserpine (RES)
+|
+|-
+|
+OMP_AN:7552
+|
+|
+OMP:0000176
+|
+biofilm phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*other:Polystyrene tubes
+*temperature:37C
+*medium:LB broth
+|
+|
+|
+PMID:25391152
+|
+|
+|-
+|
+OMP_AN:7553
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:A0A0H2V815 motA
+|
+|-
+|
+OMP_AN:7554
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7553
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= PIP (0.5 ug/mL)?
+|
+*temperature:37C
+*medium:>= PIP (0.5 ug/mL)
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:A0A0H2V815 motA
+CHEBI:28821 Piperine (PIP)
+|
+|-
+|
+OMP_AN:7555
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7586
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= PIP (0.5 ug/mL)?
+|
+*temperature:37C
+*medium:>= PIP (0.5 ug/mL)
+*medium:LB broth
+|
+ECO:0005803
+|
+motility assay evidence
+|
+PMID:25391152
+|
+UniProtKB:A0A0H2V9E2 motB
+CHEBI:28821 Piperine (PIP)
+|
+|-
+|
+OMP_AN:7556
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7587
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= PIP (0.5 ug/mL)?
+|
+*temperature:37C
+*medium:>= PIP (0.5 ug/mL)
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:A0A0H2VGH0 fimA
+CHEBI:28821 Piperine (PIP)
+|
+|-
+|
+OMP_AN:7557
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7588
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= PIP (0.5 ug/mL)?
+|
+*temperature:37C
+*medium:>= PIP (0.5 ug/mL)
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:P66797 uvrY
+CHEBI:28821 Piperine (PIP)
+|
+|-
+|
+OMP_AN:7558
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7589
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= PIP (5 ug/mL)?
+|
+*temperature:37C
+*medium:>= PIP (5 ug/mL)
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:A0A0H2VAE3 fliC
+CHEBI:28821 Piperine (PIP)
+|
+|-
+|
+OMP_AN:7559
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7590
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= PIP (5 ug/mL)?
+|
+*temperature:37C
+*medium:>= PIP (5 ug/mL)
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:P62608 papA
+CHEBI:28821 Piperine (PIP)
+|
+|-
+|
+OMP_AN:7563
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7553
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= RES (0.5 ug/mL)?
+|
+*temperature:37C
+*medium:>= RES (0.5 ug/mL)
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:A0A0H2V815 motA
+CHEBI:28487 Reserpine (RES)
+|
+|-
+|
+OMP_AN:7564
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7586
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= RES (0.5 ug/mL)?
+|
+*temperature:37C
+*medium:>= RES (0.5 ug/mL)
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:A0A0H2V9E2 motB
+CHEBI:28487 Reserpine (RES)
+|
+|-
+|
+OMP_AN:7565
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7587
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= RES (0.5 ug/mL)?
+|
+*temperature:37C
+*medium:>= RES (0.5 ug/mL)
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:A0A0H2VGH0 fimA
+CHEBI:28487 Reserpine (RES)
+|
+|-
+|
+OMP_AN:7566
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7588
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= RES (5 ug/mL)?
+|
+*temperature:37C
+*medium:>= RES (5 ug/mL)
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:P66797 uvrY
+CHEBI:28487 Reserpine (RES)
+|
+|-
+|
+OMP_AN:7567
+|
+|
+OMP:0000268
+|
+decreased gene expression
+|
+Relative to: OMP_AN:7590
+<hr>Genotype differences:<br>
+no differences
+<hr>Condition differences:<br>
+medium:>= RES (5 ug/mL)?
+|
+*temperature:37C
+*medium:>= RES (5 ug/mL)
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:P62608 papA
+CHEBI:28487 Reserpine (RES)
+|
+|-
+|
+OMP_AN:7568
+|
+NOT
+|
+OMP:0007080
+|
+altered gene expression
+|
+Relative to: OMP_AN:7589
 <hr>Genotype differences:<br>
@@ Line 1,120: / Line 1,552: @@
 *temperature:37C
 *medium:>= RES (5 ug/mL)
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:A0A0H2VAE3 fliC
+CHEBI:28487 Reserpine (RES)
+|
+|-
+|
+OMP_AN:7569
+|
+|
+OMP:0000029
+|
+presence of flagellum
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB broth
+|
+ECO:0005033
+|
+electron microscopy evidence
+|
+PMID:22708802
+|
+|
+|-
+|
+OMP_AN:7570
+|
+|
+OMP:0000111
+|
+presence of cell motility by swimming
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:swimming motility medium
+|
+ECO:0005803
+|
+motility assay evidence
+|
+PMID:25391152
+|
+|
+|-
+|
+OMP_AN:7571
+|
+|
+OMP:0000067
+|
+presence of cell motility by swarming
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
 *medium:swarming motility medium
 |
@@ Line 1,125: / Line 1,645: @@
 |
 motility assay evidence
+|
+PMID:22708802
+|
+|
+|-
+|
+OMP_AN:7572
+|
+|
+OMP:0000067
+|
+presence of cell motility by swarming
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:swarming motility medium
+|
+ECO:0005803
+|
+motility assay evidence
+|
+PMID:25391152
+|
+|
+|-
+|
+OMP_AN:7586
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
 |
 PMID:25391152
 |
-CHEBI:28487 Reserpine (RES)
+UniProtKB:A0A0H2V9E2 motB
+|
+|-
+|
+OMP_AN:7587
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:A0A0H2VGH0 fimA
+|
+|-
+|
+OMP_AN:7588
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:P66797 uvrY
+|
+|-
+|
+OMP_AN:7589
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:A0A0H2VAE3 fliC
+|
+|-
+|
+OMP_AN:7590
+|
+|
+OMP:0000253
+|
+gene expression phenotype
+|
+Relative to:
+<hr>Genotype differences:<br>
+Nothing to compare<br/>
+<hr>Condition differences:<br>
+Nothing to compare<br/>
+|
+*temperature:37C
+*medium:LB broth
+|
+ECO:0000109
+|
+reverse transcription polymerase chain reaction evidence
+|
+PMID:25391152
+|
+UniProtKB:P62608 papA
 |