Difference between revisions of "OMP ST:6326 ! Escherichia coli UPEC CFT073"

From OMPwiki
(touch)
(Table edited by Kcunningham via TableEdit)
 
(36 intermediate revisions by the same user not shown)
Line 22: Line 22:
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
||
 
||
−
*Pangenome:  
+
*Pangenome: Escherichia coli
 +
*Subspecies and/or strain: UPEC
 +
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=199310 199310]
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
Line 34: Line 36:
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 
||
 
||
−
 
+
[https://www.atcc.org/Products/All/700928.aspx ATCC 700928]
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
Line 67: Line 69:
 
|- align='left' bgcolor='#CCCCFF'
 
|- align='left' bgcolor='#CCCCFF'
 
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:7515
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*other:p(PfliC)-lux
 +
*temperature:37C
 +
*medium:0.4% glucose
 +
*medium:M9 minimal medium
 +
|
 +
ECO:0000049
 +
|
 +
reporter gene assay evidence
 +
|
 +
PMID:21821749
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7516
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7515
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:cPACs (0.1 mg/mL)?
 +
|
 +
*other:p(PfliC)-lux
 +
*temperature:37C
 +
*medium:0.4% glucose
 +
*medium:M9 minimal medium
 +
*medium:cPACs (0.1 mg/mL)
 +
|
 +
ECO:0000049
 +
|
 +
reporter gene assay evidence
 +
|
 +
PMID:21821749
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7517
 +
|
 +
 +
|
 +
OMP:0000029
 +
|
 +
presence of flagellum
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0005033
 +
|
 +
electron microscopy evidence
 +
|
 +
PMID:21821749
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7518
 +
|
 +
 +
|
 +
OMP:0000215
 +
|
 +
decreased number of flagella
 +
|
 +
Relative to: OMP_AN:7517
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:CP (10 mg/mL)?
 +
|
 +
*temperature:37C
 +
*medium:CP (10 mg/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0005033
 +
|
 +
electron microscopy evidence
 +
|
 +
PMID:21821749
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7519
 +
|
 +
 +
|
 +
OMP:0000111
 +
|
 +
presence of cell motility by swimming
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:21821749
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7520
 +
|
 +
 +
|
 +
OMP:0007093
 +
|
 +
decreased cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7519
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:cPACs (0.1 mg/mL)?
 +
|
 +
*temperature:37C
 +
*medium:cPACs (0.1 mg/mL)
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:21821749
 +
|
 +
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7521
 +
|
 +
 +
|
 +
OMP:0006100
 +
|
 +
abolished cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7519
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= CP (10 mg/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= CP (10 mg/mL)
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:21821749
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7522
 +
|
 +
 +
|
 +
OMP:0000067
 +
|
 +
presence of cell motility by swarming
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:21821749
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7523
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7522
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:cPACs (0.1 mg/mL)?
 +
|
 +
*temperature:37C
 +
*medium:cPACs (0.1 mg/mL)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:21821749
 +
|
 +
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7524
 +
|
 +
 +
|
 +
OMP:0006167
 +
|
 +
abolished cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7522
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= CP (10 mg/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= CP (10 mg/mL)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:21821749
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7525
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*other:p(PfliC)-lux
 +
*temperature:37C
 +
*medium:LB medium
 +
|
 +
ECO:0000049
 +
|
 +
reporter gene assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7526
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7525
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PG (1%)?
 +
|
 +
*other:p(PfliC)-lux
 +
*temperature:37C
 +
*medium:>= PG (1%)
 +
*medium:LB medium
 +
|
 +
ECO:0000049
 +
|
 +
reporter gene assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Punicalagin (PG) is found in pomegranate tannins
 +
|-
 +
|
 +
OMP_AN:7527
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7525
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGP (1%)?
 +
|
 +
*other:p(PfliC)-lux
 +
*temperature:37C
 +
*medium:>= PGP (1%)
 +
*medium:LB medium
 +
|
 +
ECO:0000049
 +
|
 +
reporter gene assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate fruit powder (PGP) was tested 
 +
|-
 +
|
 +
OMP_AN:7528
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7525
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGRE (1%)?
 +
|
 +
*other:p(PfliC)-lux
 +
*temperature:37C
 +
*medium:>= PGRE (1%)
 +
*medium:LB medium
 +
|
 +
ECO:0000049
 +
|
 +
reporter gene assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate rind extract (PGRE) was tested
 +
|-
 +
|
 +
OMP_AN:7529
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB medium
 +
|
 +
ECO:0000112
 +
|
 +
western blot evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7530
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7529
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGRE (5%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGRE (5%)
 +
*medium:LB medium
 +
|
 +
ECO:0000112
 +
|
 +
western blot evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate rind extract (PGRE) was tested
 +
|-
 +
|
 +
OMP_AN:7531
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7529
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PG (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PG (10%)
 +
*medium:LB medium
 +
|
 +
ECO:0000112
 +
|
 +
western blot evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Punicalagin (PG) is found in pomegranate tannins
 +
|-
 +
|
 +
OMP_AN:7532
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7529
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGP (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGP (10%)
 +
*medium:LB medium
 +
|
 +
ECO:0000112
 +
|
 +
western blot evidence
 +
|
 +
PMID:22708802
 +
|
 +
UniProtKB:A0A0H2VAE3
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate fruit powder (PGP) was tested
 +
|-
 +
|
 +
OMP_AN:7534
 +
|
 +
 +
|
 +
OMP:0000111
 +
|
 +
presence of cell motility by swimming
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:30C
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7535
 +
|
 +
 +
|
 +
OMP:0007093
 +
|
 +
decreased cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7534
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGRE (10%)?
 +
|
 +
*temperature:30C
 +
*medium:>= PGRE (10%)
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate rind extract (PGRE) was tested
 +
|-
 +
|
 +
OMP_AN:7536
 +
|
 +
 +
|
 +
OMP:0007093
 +
|
 +
decreased cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7534
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PG (10%)?
 +
|
 +
*temperature:30C
 +
*medium:>= PG (10%)
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Punicalagin (PG) is found in pomegranate tannins
 +
|-
 +
|
 +
OMP_AN:7537
 +
|
 +
 +
|
 +
OMP:0007093
 +
|
 +
decreased cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7534
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate fruit powder (PGP) was tested
 +
|-
 +
|
 +
OMP_AN:7538
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7571
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGRE (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGRE (10%)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate rind extract (PGRE) was tested
 +
|-
 +
|
 +
OMP_AN:7539
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7571
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PG (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PG (10%)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Punicalagin (PG) is found in pomegranate tannins
 +
|-
 +
|
 +
OMP_AN:7540
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7571
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGP (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGP (10%)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate fruit powder (PGP) was tested
 +
|-
 +
|
 +
OMP_AN:7541
 +
|
 +
 +
|
 +
OMP:0000215
 +
|
 +
decreased number of flagella
 +
|
 +
Relative to: OMP_AN:7569
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGRE (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGRE (10%)
 +
*medium:LB broth
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate rind extract (PGRE) was tested
 +
|-
 +
|
 +
OMP_AN:7543
 +
|
 +
 +
|
 +
OMP:0000176
 +
|
 +
biofilm phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*other:96 well plate
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7544
 +
|
 +
 +
|
 +
OMP:0007020
 +
|
 +
increased biofilm formation
 +
|
 +
Relative to: OMP_AN:7543
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*other:96 well plate
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7545
 +
|
 +
 +
|
 +
OMP:0007020
 +
|
 +
increased biofilm formation
 +
|
 +
Relative to: OMP_AN:7543
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (5 ug/mL)?
 +
|
 +
*other:96 well plate
 +
*temperature:37C
 +
*medium:>= PIP (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7546
 +
|
 +
 +
|
 +
OMP:0007020
 +
|
 +
increased biofilm formation
 +
|
 +
Relative to: OMP_AN:7552
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*other:Polystyrene tubes
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7547
 +
|
 +
 +
|
 +
OMP:0007020
 +
|
 +
increased biofilm formation
 +
|
 +
Relative to: OMP_AN:7552
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*other:Polystyrene tubes
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7548
 +
|
 +
 +
|
 +
OMP:0007093
 +
|
 +
decreased cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7570
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7549
 +
|
 +
 +
|
 +
OMP:0007093
 +
|
 +
decreased cell motility by swimming
 +
|
 +
Relative to: OMP_AN:7570
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7550
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7572
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (5 ug/mL)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7551
 +
|
 +
NOT
 +
|
 +
OMP:0005323
 +
|
 +
altered cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7551
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:37C
 +
*medium:>= RES (5 ug/mL)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7552
 +
|
 +
 +
|
 +
OMP:0000176
 +
|
 +
biofilm phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*other:Polystyrene tubes
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
 +
|
 +
 +
|
 +
PMID:25391152
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7553
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V815 motA
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7554
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7553
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V815 motA
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7555
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7586
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V9E2 motB
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7556
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7587
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VGH0 fimA
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7557
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7588
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P66797 uvrY
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7558
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7589
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VAE3 fliC
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7559
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7590
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PIP (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= PIP (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P62608 papA
 +
CHEBI:28821 Piperine (PIP)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7563
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7553
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V815 motA
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7564
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7586
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V9E2 motB
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7565
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7587
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (0.5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (0.5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VGH0 fimA
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7566
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7588
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P66797 uvrY
 +
CHEBI:28487 Reserpine (RES)
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7567
 +
|
 +
 +
|
 +
OMP:0000268
 +
|
 +
decreased gene expression
 +
|
 +
Relative to: OMP_AN:7590
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P62608 papA
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7568
 +
|
 +
NOT
 +
|
 +
OMP:0007080
 +
|
 +
altered gene expression
 +
|
 +
Relative to: OMP_AN:7589
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= RES (5 ug/mL)?
 +
|
 +
*temperature:37C
 +
*medium:>= RES (5 ug/mL)
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VAE3 fliC
 +
CHEBI:28487 Reserpine (RES)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7569
 +
|
 +
 +
|
 +
OMP:0000029
 +
|
 +
presence of flagellum
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0005033
 +
|
 +
electron microscopy evidence
 +
|
 +
PMID:22708802
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7570
 +
|
 +
 +
|
 +
OMP:0000111
 +
|
 +
presence of cell motility by swimming
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:swimming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7571
 +
|
 +
 +
|
 +
OMP:0000067
 +
|
 +
presence of cell motility by swarming
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7572
 +
|
 +
 +
|
 +
OMP:0000067
 +
|
 +
presence of cell motility by swarming
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:25391152
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7586
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2V9E2 motB
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7587
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VGH0 fimA
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7588
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P66797 uvrY
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7589
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:A0A0H2VAE3 fliC
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:7590
 +
|
 +
 +
|
 +
OMP:0000253
 +
|
 +
gene expression phenotype
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:LB broth
 +
|
 +
ECO:0000109
 +
|
 +
reverse transcription polymerase chain reaction evidence
 +
|
 +
PMID:25391152
 +
|
 +
UniProtKB:P62608 papA
 +
|
 +
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  

Latest revision as of 14:34, 30 November 2016

Strain Summary

Strain Name

Escherichia coli UPEC CFT073

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: UPEC
  • NCBI Taxonomy ID: 199310
Genotype
Strain Reference
Strain availability

ATCC 700928

Ancestry
Annotated phenotypes


edit table



Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:7515

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:p(PfliC)-lux
  • temperature:37C
  • medium:0.4% glucose
  • medium:M9 minimal medium
 ECO:0000049

reporter gene assay evidence

PMID:21821749[1]

UniProtKB:A0A0H2VAE3

OMP_AN:7516

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7515

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:0.4% glucose
  • medium:M9 minimal medium
  • medium:cPACs (0.1 mg/mL)
 ECO:0000049

reporter gene assay evidence

PMID:21821749[1]

UniProtKB:A0A0H2VAE3 CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7517

OMP:0000029

presence of flagellum

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB broth
 ECO:0005033

electron microscopy evidence

PMID:21821749[1]

OMP_AN:7518

OMP:0000215

decreased number of flagella

Relative to: OMP_AN:7517

Genotype differences:

no differences

Condition differences:

medium:CP (10 mg/mL)?

  • temperature:37C
  • medium:CP (10 mg/mL)
  • medium:LB broth
 ECO:0005033

electron microscopy evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

OMP_AN:7519

OMP:0000111

presence of cell motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

OMP_AN:7520

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7519

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • temperature:37C
  • medium:cPACs (0.1 mg/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7521

OMP:0006100

abolished cell motility by swimming

Relative to: OMP_AN:7519

Genotype differences:

no differences

Condition differences:

medium:>= CP (10 mg/mL)?

  • temperature:37C
  • medium:>= CP (10 mg/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

OMP_AN:7522

OMP:0000067

presence of cell motility by swarming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

OMP_AN:7523

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7522

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • temperature:37C
  • medium:cPACs (0.1 mg/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7524

OMP:0006167

abolished cell motility by swarming

Relative to: OMP_AN:7522

Genotype differences:

no differences

Condition differences:

medium:>= CP (10 mg/mL)?

  • temperature:37C
  • medium:>= CP (10 mg/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

OMP_AN:7525

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:p(PfliC)-lux
  • temperature:37C
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3


OMP_AN:7526

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7525

Genotype differences:

no differences

Condition differences:

medium:>= PG (1%)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:>= PG (1%)
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Punicalagin (PG) is found in pomegranate tannins

OMP_AN:7527

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7525

Genotype differences:

no differences

Condition differences:

medium:>= PGP (1%)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:>= PGP (1%)
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate fruit powder (PGP) was tested

OMP_AN:7528

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7525

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (1%)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:>= PGRE (1%)
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

OMP_AN:7529

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3

OMP_AN:7530

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7529

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (5%)?

  • temperature:37C
  • medium:>= PGRE (5%)
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

OMP_AN:7531

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7529

Genotype differences:

no differences

Condition differences:

medium:>= PG (10%)?

  • temperature:37C
  • medium:>= PG (10%)
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Punicalagin (PG) is found in pomegranate tannins

OMP_AN:7532

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7529

Genotype differences:

no differences

Condition differences:

medium:>= PGP (10%)?

  • temperature:37C
  • medium:>= PGP (10%)
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate fruit powder (PGP) was tested

OMP_AN:7534

OMP:0000111

presence of cell motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:30C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

OMP_AN:7535

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7534

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (10%)?

  • temperature:30C
  • medium:>= PGRE (10%)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

OMP_AN:7536

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7534

Genotype differences:

no differences

Condition differences:

medium:>= PG (10%)?

  • temperature:30C
  • medium:>= PG (10%)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Punicalagin (PG) is found in pomegranate tannins

OMP_AN:7537

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7534

Genotype differences:

no differences

Condition differences:

no differences

  • temperature:30C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Pomegranate fruit powder (PGP) was tested

OMP_AN:7538

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7571

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (10%)?

  • temperature:37C
  • medium:>= PGRE (10%)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

OMP_AN:7539

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7571

Genotype differences:

no differences

Condition differences:

medium:>= PG (10%)?

  • temperature:37C
  • medium:>= PG (10%)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Punicalagin (PG) is found in pomegranate tannins

OMP_AN:7540

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7571

Genotype differences:

no differences

Condition differences:

medium:>= PGP (10%)?

  • temperature:37C
  • medium:>= PGP (10%)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Pomegranate fruit powder (PGP) was tested

OMP_AN:7541

OMP:0000215

decreased number of flagella

Relative to: OMP_AN:7569

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (10%)?

  • temperature:37C
  • medium:>= PGRE (10%)
  • medium:LB broth
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

OMP_AN:7543

OMP:0000176

biofilm phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:96 well plate
  • temperature:37C
  • medium:LB broth

PMID:25391152[3]

OMP_AN:7544

OMP:0007020

increased biofilm formation

Relative to: OMP_AN:7543

Genotype differences:

no differences

Condition differences:

medium:>= RES (0.5 ug/mL)?

  • other:96 well plate
  • temperature:37C
  • medium:>= RES (0.5 ug/mL)
  • medium:LB broth

PMID:25391152[3]

CHEBI:28487 Reserpine (RES)

OMP_AN:7545

OMP:0007020

increased biofilm formation

Relative to: OMP_AN:7543

Genotype differences:

no differences

Condition differences:

medium:>= PIP (5 ug/mL)?

  • other:96 well plate
  • temperature:37C
  • medium:>= PIP (5 ug/mL)
  • medium:LB broth

PMID:25391152[3]

CHEBI:28821 Piperine (PIP)

OMP_AN:7546

OMP:0007020

increased biofilm formation

Relative to: OMP_AN:7552

Genotype differences:

no differences

Condition differences:

medium:>= PIP (0.5 ug/mL)?

  • other:Polystyrene tubes
  • temperature:37C
  • medium:>= PIP (0.5 ug/mL)
  • medium:LB broth

PMID:25391152[3]

CHEBI:28821 Piperine (PIP)

OMP_AN:7547

OMP:0007020

increased biofilm formation

Relative to: OMP_AN:7552

Genotype differences:

no differences

Condition differences:

medium:>= RES (0.5 ug/mL)?

  • other:Polystyrene tubes
  • temperature:37C
  • medium:>= RES (0.5 ug/mL)
  • medium:LB broth

PMID:25391152[3]

CHEBI:28487 Reserpine (RES)

OMP_AN:7548

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7570

Genotype differences:

no differences

Condition differences:

medium:>= PIP (0.5 ug/mL)?

  • temperature:37C
  • medium:>= PIP (0.5 ug/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:25391152[3]

CHEBI:28821 Piperine (PIP)

OMP_AN:7549

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7570

Genotype differences:

no differences

Condition differences:

medium:>= RES (0.5 ug/mL)?

  • temperature:37C
  • medium:>= RES (0.5 ug/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:25391152[3]

CHEBI:28487 Reserpine (RES)

OMP_AN:7550

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7572

Genotype differences:

no differences

Condition differences:

medium:>= PIP (5 ug/mL)?

  • temperature:37C
  • medium:>= PIP (5 ug/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:25391152[3]

CHEBI:28821 Piperine (PIP)

OMP_AN:7551

NOT

OMP:0005323

altered cell motility by swarming

Relative to: OMP_AN:7551

Genotype differences:

no differences

Condition differences:

no differences

  • temperature:37C
  • medium:>= RES (5 ug/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:25391152[3]

CHEBI:28487 Reserpine (RES)

OMP_AN:7552

OMP:0000176

biofilm phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:Polystyrene tubes
  • temperature:37C
  • medium:LB broth

PMID:25391152[3]

OMP_AN:7553

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:A0A0H2V815 motA

OMP_AN:7554

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7553

Genotype differences:

no differences

Condition differences:

medium:>= PIP (0.5 ug/mL)?

  • temperature:37C
  • medium:>= PIP (0.5 ug/mL)
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:A0A0H2V815 motA CHEBI:28821 Piperine (PIP)

OMP_AN:7555

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7586

Genotype differences:

no differences

Condition differences:

medium:>= PIP (0.5 ug/mL)?

  • temperature:37C
  • medium:>= PIP (0.5 ug/mL)
  • medium:LB broth
 ECO:0005803

motility assay evidence

PMID:25391152[3]

UniProtKB:A0A0H2V9E2 motB CHEBI:28821 Piperine (PIP)

OMP_AN:7556

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7587

Genotype differences:

no differences

Condition differences:

medium:>= PIP (0.5 ug/mL)?

  • temperature:37C
  • medium:>= PIP (0.5 ug/mL)
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:A0A0H2VGH0 fimA CHEBI:28821 Piperine (PIP)

OMP_AN:7557

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7588

Genotype differences:

no differences

Condition differences:

medium:>= PIP (0.5 ug/mL)?

  • temperature:37C
  • medium:>= PIP (0.5 ug/mL)
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:P66797 uvrY CHEBI:28821 Piperine (PIP)

OMP_AN:7558

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7589

Genotype differences:

no differences

Condition differences:

medium:>= PIP (5 ug/mL)?

  • temperature:37C
  • medium:>= PIP (5 ug/mL)
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:A0A0H2VAE3 fliC CHEBI:28821 Piperine (PIP)

OMP_AN:7559

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7590

Genotype differences:

no differences

Condition differences:

medium:>= PIP (5 ug/mL)?

  • temperature:37C
  • medium:>= PIP (5 ug/mL)
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:P62608 papA CHEBI:28821 Piperine (PIP)

OMP_AN:7563

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7553

Genotype differences:

no differences

Condition differences:

medium:>= RES (0.5 ug/mL)?

  • temperature:37C
  • medium:>= RES (0.5 ug/mL)
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:A0A0H2V815 motA CHEBI:28487 Reserpine (RES)

OMP_AN:7564

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7586

Genotype differences:

no differences

Condition differences:

medium:>= RES (0.5 ug/mL)?

  • temperature:37C
  • medium:>= RES (0.5 ug/mL)
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:A0A0H2V9E2 motB CHEBI:28487 Reserpine (RES)

OMP_AN:7565

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7587

Genotype differences:

no differences

Condition differences:

medium:>= RES (0.5 ug/mL)?

  • temperature:37C
  • medium:>= RES (0.5 ug/mL)
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:A0A0H2VGH0 fimA CHEBI:28487 Reserpine (RES)

OMP_AN:7566

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7588

Genotype differences:

no differences

Condition differences:

medium:>= RES (5 ug/mL)?

  • temperature:37C
  • medium:>= RES (5 ug/mL)
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:P66797 uvrY CHEBI:28487 Reserpine (RES)

OMP_AN:7567

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7590

Genotype differences:

no differences

Condition differences:

medium:>= RES (5 ug/mL)?

  • temperature:37C
  • medium:>= RES (5 ug/mL)
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:P62608 papA CHEBI:28487 Reserpine (RES)

OMP_AN:7568

NOT

OMP:0007080

altered gene expression

Relative to: OMP_AN:7589

Genotype differences:

no differences

Condition differences:

medium:>= RES (5 ug/mL)?

  • temperature:37C
  • medium:>= RES (5 ug/mL)
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:A0A0H2VAE3 fliC CHEBI:28487 Reserpine (RES)

OMP_AN:7569

OMP:0000029

presence of flagellum

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB broth
 ECO:0005033

electron microscopy evidence

PMID:22708802[2]

OMP_AN:7570

OMP:0000111

presence of cell motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:25391152[3]

OMP_AN:7571

OMP:0000067

presence of cell motility by swarming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

OMP_AN:7572

OMP:0000067

presence of cell motility by swarming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:25391152[3]

OMP_AN:7586

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:A0A0H2V9E2 motB

OMP_AN:7587

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:A0A0H2VGH0 fimA

OMP_AN:7588

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:P66797 uvrY

OMP_AN:7589

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:A0A0H2VAE3 fliC

OMP_AN:7590

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB broth
 ECO:0000109

reverse transcription polymerase chain reaction evidence

PMID:25391152[3]

UniProtKB:P62608 papA


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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Hidalgo, G et al. (2011) Inhibition of Escherichia coli CFT073 fliC expression and motility by cranberry materials. Appl. Environ. Microbiol. 77 6852-7 PubMed OMPwiki page
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 Asadishad, B et al. (2012) Pomegranate materials inhibit flagellin gene expression and flagellar-propelled motility of uropathogenic Escherichia coli strain CFT073. FEMS Microbiol. Lett. 334 87-94 PubMed OMPwiki page
  3. ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 3.12 3.13 3.14 3.15 3.16 3.17 3.18 3.19 3.20 3.21 3.22 3.23 3.24 3.25 3.26 3.27 3.28 3.29 Dusane, DH et al. (2014) Alkaloids modulate motility, biofilm formation and antibiotic susceptibility of uropathogenic Escherichia coli. PLoS ONE 9 e112093 PubMed OMPwiki page
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