Difference between revisions of "OMP ST:908 ! AW659"

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==Strain Summary==
 
==Strain Summary==
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{|  id="T571fc9942a46f"  class=" tableEdit Strain_info_table" 
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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AW659
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Escherichia coli
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*Subspecies and/or strain: Taxon: K-12
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*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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tsr-12 tar
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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PMID:6339465
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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*parent (recipient):AW656
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*parent (donor):AW648
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Phenotype Annotation==
 
==Phenotype Annotation==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D571fc9942f157"  class=" tableEdit OMP_annotation_table dataTable" 
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!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:632
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OMP:0007005
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decreased negative chemotaxis
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Relative to: OMP_AN:630
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<hr>Genotype differences:<br>
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+tsr-12 +tar  -Lambda- -araC14 -fhuA31 -galK2(Oc) -galT22 -glnX44(AS) -hisG4(Oc) -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -rfbC1 -rpsL136(StrR) -thiE1 -thr-1 -tsx-78 -xylA5
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<hr>Condition differences:<br>
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no differences
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*temperature:25C
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*medium:glycerol (1M)
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*medium:motility medium
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ECO:0000181
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in vitro assay evidence
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PMID:6339465
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CHEBI:17754 glycerol
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Tethered cell assay
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OMP_AN:633
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OMP:0007005
 +
|
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decreased negative chemotaxis
 +
|
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Relative to: OMP_AN:631
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<hr>Genotype differences:<br>
 +
+tsr-12 +tar  -Lambda- -araC14 -fhuA31 -galK2(Oc) -galT22 -glnX44(AS) -hisG4(Oc) -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -rfbC1 -rpsL136(StrR) -thiE1 -thr-1 -tsx-78 -xylA5
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<hr>Condition differences:<br>
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no differences
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|
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*temperature:25C
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*medium:ethylene glycol (1M)
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*medium:motility medium
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ECO:0000181
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in vitro assay evidence
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PMID:6339465
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CHEBI:30742 ethylene glycol
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Tethered cell assay
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Latest revision as of 15:09, 26 April 2016

Strain Summary

Strain Name

AW659

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: Taxon: K-12
  • NCBI Taxonomy ID: 83333
Genotype

tsr-12 tar

Strain Reference

PMID:6339465[1]

Strain availability
Ancestry
  • parent (recipient):AW656
  • parent (donor):AW648
Annotated phenotypes


edit table



Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:632

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:630

Genotype differences:

+tsr-12 +tar -Lambda- -araC14 -fhuA31 -galK2(Oc) -galT22 -glnX44(AS) -hisG4(Oc) -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -rfbC1 -rpsL136(StrR) -thiE1 -thr-1 -tsx-78 -xylA5

Condition differences:

no differences

  • temperature:25C
  • medium:glycerol (1M)
  • medium:motility medium
 ECO:0000181

in vitro assay evidence

PMID:6339465[1]

CHEBI:17754 glycerol

Tethered cell assay

OMP_AN:633

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:631

Genotype differences:

+tsr-12 +tar -Lambda- -araC14 -fhuA31 -galK2(Oc) -galT22 -glnX44(AS) -hisG4(Oc) -lacY1 -leuB6(Am) -mgl-51 -mtl-1 -rfbC1 -rpsL136(StrR) -thiE1 -thr-1 -tsx-78 -xylA5

Condition differences:

no differences

  • temperature:25C
  • medium:ethylene glycol (1M)
  • medium:motility medium
 ECO:0000181

in vitro assay evidence

PMID:6339465[1]

CHEBI:30742 ethylene glycol

Tethered cell assay

edit table



Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 1.2 Oosawa, K & Imae, Y (1983) Glycerol and ethylene glycol: members of a new class of repellents of Escherichia coli chemotaxis. J. Bacteriol. 154 104-12 PubMed OMPwiki page
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