Difference between revisions of "OMP ST:925 ! Escherichia coli K-12 JW5249"

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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
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BW25113 marA752(del)::kan, ECK1524
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BW25113 marA752(del)::FRT-kan-FRT, ECK1524, JW5249-1
 
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
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<hr>Genotype differences:<br>
 
<hr>Genotype differences:<br>
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+marA752(del)
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+lacZ4787(del)( +marA752(del)  -lacZ4787(del)
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
 
no differences
 
no differences
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<hr>Genotype differences:<br>
 
<hr>Genotype differences:<br>
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+marA752(del)
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+lacZ4787(del)( +marA752(del)  -lacZ4787(del)
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
 
no differences
 
no differences
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fitness score = -3.59  
 
fitness score = -3.59  
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OMP_AN:35900
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OMP:0007249
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decreased resistance to a chemical
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Relative to: OMP_AN:27575
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 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +marA752(del)  -lacZ4787(del)
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<hr>Condition differences:<br>
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no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
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*medium:Acriflavine (acriflavinium chloride)
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:74728) Acriflavine (acriflavinium chloride)
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*chemical concentration= 2 ug/ml
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*normalized fitness= -3.59
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OMP_AN:35901
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OMP:0006044
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decreased resistance to beta-lactam
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Relative to: OMP_AN:27537
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 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +marA752(del)  -lacZ4787(del)
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<hr>Condition differences:<br>
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no differences
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 +
*temperature:37C
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*medium:LB agar
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*medium:Mecillinam
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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 +
PMID:21185072
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towards some (CHEBI:51208) Mecillinam
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 +
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*chemical concentration=  0.09 ug/ml
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*normalized fitness= -4
  
 
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Latest revision as of 02:32, 23 October 2019

Strain Summary

Strain Name

Escherichia coli K-12 JW5249

Synonyms

BW25113 marA752(del)::FRT-kan-FRT, ECK1524, JW5249-1

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 marA752(del)::kan

Strain Reference
Strain availability

Coli Genetic Stock Center

Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes


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Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:662

OMP:0006044

decreased resistance to beta-lactam

Relative to: OMP_AN:661

Genotype differences:

+lacZ4787(del)( +marA752(del) -lacZ4787(del)

Condition differences:

no differences

medium:mecillinam (0.09 ug ml-1)

PMID:21185072[2]

CHEBI:51208 mecillinam

fitness score = -4.00

OMP_AN:664

OMP:0007370

decreased resistance to an acridine

Relative to: OMP_AN:663

Genotype differences:

+lacZ4787(del)( +marA752(del) -lacZ4787(del)

Condition differences:

no differences

medium:acriflavine (10 ug ml-1)

PMID:21185072[2]

CHEBI:74728 acriflavine

fitness score = -3.59

OMP_AN:35900

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27575

Genotype differences:

+lacZ4787(del)( +marA752(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Acriflavine (acriflavinium chloride)
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:74728) Acriflavine (acriflavinium chloride)

  • chemical concentration= 2 ug/ml
  • normalized fitness= -3.59

OMP_AN:35901

OMP:0006044

decreased resistance to beta-lactam

Relative to: OMP_AN:27537

Genotype differences:

+lacZ4787(del)( +marA752(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Mecillinam
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CHEBI:51208) Mecillinam

  • chemical concentration= 0.09 ug/ml
  • normalized fitness= -4
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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
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