Difference between revisions of "OMP ST:1924 ! Schizosaccharomyces pombe vps41delta"

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==Strain Summary==
 
==Strain Summary==
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{|  id="F57e00434d246e"  class=" tableEdit Strain_info_table" 
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Schizosaccharomyces pombe vps41delta
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Schizosaccharomyces pombe
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*Subspecies and/or strain: vps41delta
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*NCBI Taxonomy ID:4896
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32vps41delta
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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PMID:20473289
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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http://us.bioneer.com/products/spombe/spombeoverview.aspx
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Phenotype Annotation==
 
==Phenotype Annotation==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A57e00434d408c"  class=" tableEdit OMP_annotation_table dataTable" 
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:2200
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OMP:0007460
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viable cell
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Relative to: OMP_AN:1028
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<hr>Genotype differences:<br>
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+leu1-32/leu1-32vps41delta  -leu1-32/leu1-32 -h+/h+
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<hr>Condition differences:<br>
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no differences
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PMID:20473289
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|-
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OMP_AN:10394
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OMP:0007460
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|
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viable vegetative cell population
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|
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Relative to: OMP_AN:1028
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<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32vps41delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:23697806
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|
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|
 +
 +
|-
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|
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OMP_AN:15078
 +
|
 +
 
 +
|
 +
OMP:0007102
 +
|
 +
more rounded cell shape
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32vps41delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
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temperature:?25-32C
 +
|
 +
 
 +
|
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ECO:0001098
 +
|
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microscopy evidence
 +
|
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PMID:23697806
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|
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 +
|
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 +
|-
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|
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OMP_AN:15106
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|
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 +
|
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OMP:0007716
 +
|
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viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32vps41delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
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Latest revision as of 23:32, 8 September 2019

Strain Summary

Strain Name

Schizosaccharomyces pombe vps41delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: vps41delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32vps41delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:2200

OMP:0007460

viable cell

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps41delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

PMID:20473289[1]

OMP_AN:10394

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps41delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

PMID:23697806[2]

OMP_AN:15078

OMP:0007102

more rounded cell shape

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps41delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:15106

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps41delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
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