Difference between revisions of "OMP ST:74680 ! Shigella flexneri 5a Sh4"
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information | !align=left align='left' bgcolor='#CCCCFF' |Taxon Information | ||
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| − | *Pangenome: | + | *Pangenome: Shigella flexneri |
| + | *Subspecies and/or strain: 5a str. M90T | ||
| + | *NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=1086030&lvl=3&lin=f&keep=1&srchmode=1&unlock 1086030] | ||
|- | |- | ||
!align=left align='left' bgcolor='#CCCCFF' |Genotype | !align=left align='left' bgcolor='#CCCCFF' |Genotype | ||
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| − | SmR | + | SmR dsbA(del)::kan |
|- | |- | ||
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference | !align=left align='left' bgcolor='#CCCCFF' |Strain Reference | ||
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry | !align=left align='left' bgcolor='#CCCCFF' |Ancestry | ||
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| − | parent:OMP ST:74679 ! Shigella flexneri 5a str. M90TS | + | *parent (donor):E. coli K-12 JCB571 |
| + | *parent (recipient):OMP ST:74679 ! Shigella flexneri 5a str. M90TS | ||
|- | |- | ||
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes | !align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes | ||
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes | !|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes | ||
| + | |- | ||
| + | | | ||
| + | OMP_AN:27270 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | OMP:0000061 | ||
| + | | | ||
| + | decreased virulence | ||
| + | | | ||
| + | Relative to: OMP_AN:27269 | ||
| + | |||
| + | <hr>Genotype differences:<br> | ||
| + | +dsbA(del) | ||
| + | <hr>Condition differences:<br> | ||
| + | no differences | ||
| + | | | ||
| + | *temperature:37C | ||
| + | *medium:fetal calf serum (10%) | ||
| + | *medium:minimal essential medium | ||
| + | | | ||
| + | ECO:0001165 | ||
| + | | | ||
| + | colony counting evidence used in manual assertion | ||
| + | | | ||
| + | PMID:9673279 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | Table 2 | ||
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Latest revision as of 23:52, 18 February 2019
Contents
Strain Summary
| Strain Name |
Shigella flexneri 5a Sh4 |
|---|---|
| Synonyms | |
| Taxon Information |
|
| Genotype |
SmR dsbA(del)::kan |
| Strain Reference | |
| Strain availability | |
| Ancestry |
|
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:27270 |
OMP:0000061 |
decreased virulence |
Relative to: OMP_AN:27269 Genotype differences: +dsbA(del) Condition differences: no differences |
|
ECO:0001165 |
colony counting evidence used in manual assertion |
Table 2 | |||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ 1.0 1.1 Yu, J (1998) Inactivation of DsbA, but not DsbC and DsbD, affects the intracellular survival and virulence of Shigella flexneri. Infect. Immun. 66 3909-17 PubMed OMPwiki page
