OMP ST:74680 ! Shigella flexneri 5a Sh4: Difference between revisions

From OMPwiki
Jump to navigationJump to search
← Older edit
touch
Krstruck (talk | contribs)
237 edits
Table edited by Krstruck via TableEdit
 
(2 intermediate revisions by 2 users not shown)
Line 22: Line 22:
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
||
*Pangenome:  
*Pangenome: Shigella flexneri
*Subspecies and/or strain: 5a str. M90T
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=1086030&lvl=3&lin=f&keep=1&srchmode=1&unlock 1086030]
|-
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
||
SmR
SmR dsbA(del)::kan
|-
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
Line 38: Line 40:
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
||
parent:OMP ST:74679 ! Shigella flexneri 5a str. M90TS
*parent (donor):E. coli K-12 JCB571
*parent (recipient):OMP ST:74679 ! Shigella flexneri 5a str. M90TS
|-
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
Line 64: Line 67:
|- align='left' bgcolor='#CCCCFF'
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27270
|
|
OMP:0000061
|
decreased virulence
|
Relative to: OMP_AN:27269
<hr>Genotype differences:<br>
+dsbA(del)
<hr>Condition differences:<br>
no differences
|
*temperature:37C
*medium:fetal calf serum (10%)
*medium:minimal essential medium
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:9673279
|
|
Table 2


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Latest revision as of 05:52, 19 February 2019

Strain Summary

Strain Name

Shigella flexneri 5a Sh4

Synonyms
Taxon Information
  • Pangenome: Shigella flexneri
  • Subspecies and/or strain: 5a str. M90T
  • NCBI Taxonomy ID: 1086030
Genotype

SmR dsbA(del)::kan

Strain Reference

PMID:9673279[1]

Strain availability
Ancestry
Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:27270

OMP:0000061

decreased virulence

Relative to: OMP_AN:27269

Genotype differences:

+dsbA(del)

Condition differences:

no differences

  • temperature:37C
  • medium:fetal calf serum (10%)
  • medium:minimal essential medium
 ECO:0001165

colony counting evidence used in manual assertion

PMID:9673279[1]

Table 2

edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Yu, J (1998) Inactivation of DsbA, but not DsbC and DsbD, affects the intracellular survival and virulence of Shigella flexneri. Infect. Immun. 66 3909-17 PubMed
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=OMP_ST:74680_!_Shigella_flexneri_5a_Sh4&oldid=130904"