Difference between revisions of "OMP ST:74680 ! Shigella flexneri 5a Sh4"

From OMPwiki
(Page creation by SpecialNewPage)
 
(Table edited by Krstruck via TableEdit)
 
(3 intermediate revisions by 2 users not shown)
Line 2: Line 2:
  
 
==Strain Summary==
 
==Strain Summary==
−
<newTableEdit>
+
<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.32356.U5c6a07123eae5-->
−
Template:Strain_info_table
+
<!--
−
</newTableEdit>
+
******************************************************************************************
 +
*
 +
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 +
*
 +
****************************************************************************************** -->
 +
{|  id="U5c6a07123eae5"  class=" tableEdit Strain_info_table" 
 +
 
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 +
||
 +
Shigella flexneri 5a Sh4
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 +
||
 +
 
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 +
||
 +
*Pangenome: Shigella flexneri
 +
*Subspecies and/or strain: 5a str. M90T
 +
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=1086030&lvl=3&lin=f&keep=1&srchmode=1&unlock 1086030]
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 +
||
 +
SmR dsbA(del)::kan
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 +
||
 +
PMID:9673279
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 +
||
 +
 
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 +
||
 +
*parent (donor):E. coli K-12 JCB571
 +
*parent (recipient):OMP ST:74679 ! Shigella flexneri 5a str. M90TS
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 +
||
 +
 
 +
 
 +
|- class="tableEdit_footer"
 +
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32356.U5c6a07123eae5&page=32356&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
 +
|}
 +
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.32356.U5c6a07123eae5--></protect>
  
  
Line 11: Line 57:
  
 
==Phenotype Annotation==
 
==Phenotype Annotation==
−
<newTableEdit>
+
<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.32356.H5c6a0712407f1-->
−
Template:OMP_annotation_table
+
<!--
−
</newTableEdit>
+
******************************************************************************************
 +
*
 +
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 +
*
 +
****************************************************************************************** -->
 +
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H5c6a0712407f1"  class=" tableEdit OMP_annotation_table dataTable" 
 +
|- align='left' bgcolor='#CCCCFF'
 +
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:27270
 +
|
 +
 
 +
|
 +
OMP:0000061
 +
|
 +
decreased virulence
 +
|
 +
Relative to: OMP_AN:27269
 +
 
 +
<hr>Genotype differences:<br>
 +
+dsbA(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:37C
 +
*medium:fetal calf serum (10%)
 +
*medium:minimal essential medium
 +
|
 +
ECO:0001165
 +
|
 +
colony counting evidence used in manual assertion
 +
|
 +
PMID:9673279
 +
|
 +
 
 +
|
 +
Table 2
 +
 
 +
|- class="tableEdit_footer"
 +
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32356.H5c6a0712407f1&page=32356&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
 +
|}
 +
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.32356.H5c6a0712407f1--></protect>
  
  

Latest revision as of 23:52, 18 February 2019

Strain Summary

Strain Name

Shigella flexneri 5a Sh4

Synonyms
Taxon Information
  • Pangenome: Shigella flexneri
  • Subspecies and/or strain: 5a str. M90T
  • NCBI Taxonomy ID: 1086030
Genotype

SmR dsbA(del)::kan

Strain Reference

PMID:9673279[1]

Strain availability
Ancestry
Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:27270

OMP:0000061

decreased virulence

Relative to: OMP_AN:27269

Genotype differences:

+dsbA(del)

Condition differences:

no differences

  • temperature:37C
  • medium:fetal calf serum (10%)
  • medium:minimal essential medium
 ECO:0001165

colony counting evidence used in manual assertion

PMID:9673279[1]

Table 2

edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Yu, J (1998) Inactivation of DsbA, but not DsbC and DsbD, affects the intracellular survival and virulence of Shigella flexneri. Infect. Immun. 66 3909-17 PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=OMP_ST:74680_!_Shigella_flexneri_5a_Sh4&oldid=130904"