Difference between revisions of "OMP ST:2959 ! Schizosaccharomyces pombe mrc1delta"

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==Strain Summary==
 
==Strain Summary==
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{|  id="V57e006773bb78"  class=" tableEdit Strain_info_table" 
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Schizosaccharomyces pombe mrc1delta
 +
|-
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 +
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 +
|-
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 +
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*Pangenome: Schizosaccharomyces pombe
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*Subspecies and/or strain: mrc1delta
 +
*NCBI Taxonomy ID:4896
 +
|-
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
 +
||
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ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 mrc1delta
 +
|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 +
||
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PMID:20473289
 +
|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 +
||
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http://us.bioneer.com/products/spombe/spombeoverview.aspx
 +
|-
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 +
||
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parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Phenotype Annotation==
 
==Phenotype Annotation==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N57e006773d711"  class=" tableEdit OMP_annotation_table dataTable" 
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:3502
 +
|
 +
 
 +
|
 +
OMP:0007460
 +
|
 +
viable cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+mrc1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:20473289
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:10119
 +
|
 +
 
 +
|
 +
OMP:0007460
 +
|
 +
viable vegetative cell population
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+mrc1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:16471
 +
|
 +
NOT
 +
|
 +
OMP:0007715
 +
|
 +
altered vegetative cell morphology
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+mrc1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:20495
 +
|
 +
 
 +
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+mrc1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:26707
 +
|
 +
 
 +
|
 +
OMP:0007782
 +
|
 +
 
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+mrc1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
other:hydroxyurea?
 +
temperature:?25-32C
 +
|
 +
other:hydroxyurea
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
CHEBI:44423 hydroxyurea
 +
 
 +
has_penetrance: FYPO_EXT:0000002 medium
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:27186
 +
|
 +
 
 +
|
 +
OMP:0007806
 +
|
 +
increased cell population viability upon nitrogen starvation
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+mrc1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:glucose MM, no nitrogen;agar plates?
 +
|
 +
*temperature:25-32C
 +
*medium:glucose MM, no nitrogen
 +
*medium:agar plates
 +
|
 +
ECO:0001563
 +
|
 +
cell growth assay evidence
 +
|
 +
PMID:25452419
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:27231
 +
|
 +
 
 +
|
 +
OMP:0007806
 +
|
 +
increased cell population viability upon nitrogen starvation
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+mrc1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:glucose MM, no nitrogen?
 +
|
 +
*temperature:25-32C
 +
*medium:glucose MM, no nitrogen
 +
|
 +
ECO:0007147
 +
|
 +
competitive growth assay evidence used in manual assertion
 +
|
 +
PMID:25452419
 +
|
 +
 
 +
|
 +
 +
 
 +
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Latest revision as of 15:15, 20 June 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe mrc1delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: mrc1delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 mrc1delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:3502

OMP:0007460

viable cell

Relative to: OMP_AN:1028

Genotype differences:

+mrc1delta -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:20473289[1]

OMP_AN:10119

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+mrc1delta -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:23697806[2]

OMP_AN:16471

NOT

OMP:0007715

altered vegetative cell morphology

Relative to: OMP_AN:1028

Genotype differences:

+mrc1delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:20495

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+mrc1delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:26707

OMP:0007782

Relative to: OMP_AN:1028

Genotype differences:

+mrc1delta -h+/h+

Condition differences:

other:hydroxyurea? temperature:?25-32C

other:hydroxyurea

ECO:0001098

microscopy evidence

PMID:23697806[2]

CHEBI:44423 hydroxyurea

has_penetrance: FYPO_EXT:0000002 medium

OMP_AN:27186

OMP:0007806

increased cell population viability upon nitrogen starvation

Relative to: OMP_AN:1028

Genotype differences:

+mrc1delta -h+/h+

Condition differences:

medium:glucose MM, no nitrogen;agar plates?

  • temperature:25-32C
  • medium:glucose MM, no nitrogen
  • medium:agar plates
 ECO:0001563

cell growth assay evidence

PMID:25452419[3]

OMP_AN:27231

OMP:0007806

increased cell population viability upon nitrogen starvation

Relative to: OMP_AN:1028

Genotype differences:

+mrc1delta -h+/h+

Condition differences:

medium:glucose MM, no nitrogen?

  • temperature:25-32C
  • medium:glucose MM, no nitrogen
 ECO:0007147

competitive growth assay evidence used in manual assertion

PMID:25452419[3]


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
  3. ↑ 3.0 3.1 Sideri, T et al. (2014) Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence. G3 (Bethesda) 5 145-55 PubMed OMPwiki page
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