Difference between revisions of "OMP ST:2165 ! Schizosaccharomyces pombe vps66delta"

From OMPwiki
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+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
no differences
+
:?
 +
temperature:?25-32C
 
|
 
|
  
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+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
no differences
+
:?
 +
temperature:?25-32C
 
|
 
|
  
Line 137: Line 139:
 
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
no differences
+
:?
 +
temperature:?25-32C
 
|
 
|
  
Line 146: Line 149:
 
|
 
|
 
PMID:23697806
 
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:18438
 +
|
 +
NOT
 +
|
 +
OMP:0007713
 +
|
 +
altered vegetative cell size
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:18957
 +
|
 +
 +
|
 +
OMP:0007708
 +
|
 +
altered vegetative cell shape
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:18958
 +
|
 +
 +
|
 +
OMP:0007708
 +
|
 +
altered vegetative cell shape
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:19173
 +
|
 +
 +
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:19174
 +
|
 +
 +
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:26971
 +
|
 +
 +
|
 +
OMP:0007803
 +
|
 +
decreased vegetative cell population growth rate
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:glucose MM?
 +
|
 +
*temperature:25-32C
 +
*medium:glucose MM
 +
|
 +
ECO:0007147
 +
|
 +
competitive growth assay evidence used in manual assertion
 +
|
 +
PMID:25452419
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:27171
 +
|
 +
 +
|
 +
OMP:0007806
 +
|
 +
increased cell population viability upon nitrogen starvation
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:glucose MM, no nitrogen;agar plates?
 +
|
 +
*temperature:25-32C
 +
*medium:glucose MM, no nitrogen
 +
*medium:agar plates
 +
|
 +
ECO:0001563
 +
|
 +
cell growth assay evidence
 +
|
 +
PMID:25452419
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:27216
 +
|
 +
 +
|
 +
OMP:0007806
 +
|
 +
increased cell population viability upon nitrogen starvation
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32vps66delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:glucose MM, no nitrogen?
 +
|
 +
*temperature:25-32C
 +
*medium:glucose MM, no nitrogen
 +
|
 +
ECO:0007147
 +
|
 +
competitive growth assay evidence used in manual assertion
 +
|
 +
PMID:25452419
 
|
 
|
  

Latest revision as of 16:11, 20 June 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe vps66delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: vps66delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32vps66delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:2500

OMP:0007460

viable cell

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps66delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:20473289[1]

OMP_AN:8792

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps66delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:23697806[2]

OMP_AN:18437

NOT

OMP:0007713

altered vegetative cell size

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps66delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:18438

NOT

OMP:0007713

altered vegetative cell size

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps66delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:18957

OMP:0007708

altered vegetative cell shape

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps66delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:18958

OMP:0007708

altered vegetative cell shape

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps66delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:19173

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps66delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:19174

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps66delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:26971

OMP:0007803

decreased vegetative cell population growth rate

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps66delta -leu1-32/leu1-32 -h+/h+

Condition differences:

medium:glucose MM?

  • temperature:25-32C
  • medium:glucose MM
 ECO:0007147

competitive growth assay evidence used in manual assertion

PMID:25452419[3]

OMP_AN:27171

OMP:0007806

increased cell population viability upon nitrogen starvation

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps66delta -leu1-32/leu1-32 -h+/h+

Condition differences:

medium:glucose MM, no nitrogen;agar plates?

  • temperature:25-32C
  • medium:glucose MM, no nitrogen
  • medium:agar plates
 ECO:0001563

cell growth assay evidence

PMID:25452419[3]

OMP_AN:27216

OMP:0007806

increased cell population viability upon nitrogen starvation

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32vps66delta -leu1-32/leu1-32 -h+/h+

Condition differences:

medium:glucose MM, no nitrogen?

  • temperature:25-32C
  • medium:glucose MM, no nitrogen
 ECO:0007147

competitive growth assay evidence used in manual assertion

PMID:25452419[3]


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
  3. ↑ 3.0 3.1 3.2 Sideri, T et al. (2014) Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence. G3 (Bethesda) 5 145-55 PubMed OMPwiki page
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