Difference between revisions of "OMP ST:4564 ! Schizosaccharomyces pombe ubr1delta"

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==Strain Summary==
 
==Strain Summary==
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{|  id="U57e009fe27fe2"  class=" tableEdit Strain_info_table" 
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Schizosaccharomyces pombe ubr1delta
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 +
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 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 +
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*Pangenome: Schizosaccharomyces pombe
 +
*Subspecies and/or strain: ubr1delta
 +
*NCBI Taxonomy ID:4896
 +
|-
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
 +
||
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ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 ubr1delta
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 +
||
 +
PMID:20473289
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 +
||
 +
http://us.bioneer.com/products/spombe/spombeoverview.aspx
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 +
||
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parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
 +
|-
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Phenotype Annotation==
 
==Phenotype Annotation==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z57e009fe29be7"  class=" tableEdit OMP_annotation_table dataTable" 
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|- align='left' bgcolor='#CCCCFF'
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:5527
 +
|
 +
 
 +
|
 +
OMP:0007460
 +
|
 +
viable vegetative cell population
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+ubr1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:20473289
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:11120
 +
|
 +
 
 +
|
 +
OMP:0007460
 +
|
 +
viable vegetative cell population
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+ubr1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:13929
 +
|
 +
 
 +
|
 +
OMP:0007736
 +
|
 +
increased septation index
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+ubr1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:14438
 +
|
 +
 
 +
|
 +
OMP:0007747
 +
|
 +
altered actin cytoskeleton morphology during vegetative growth
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+ubr1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:15082
 +
|
 +
 
 +
|
 +
OMP:0007102
 +
|
 +
more rounded shape
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+ubr1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:15110
 +
|
 +
 
 +
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+ubr1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:22319
 +
|
 +
 
 +
|
 +
OMP:0007765
 +
|
 +
altered actin cortical patch localization
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+ubr1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:22331
 +
|
 +
 
 +
|
 +
OMP:0007761
 +
|
 +
altered microtubule cytoskeleton
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+ubr1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:26696
 +
|
 +
 
 +
|
 +
OMP:0007782
 +
|
 +
 
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+ubr1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
other:hydroxyurea?
 +
temperature:?25-32C
 +
|
 +
other:hydroxyurea
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
CHEBI:44423 hydroxyurea
 +
 
 +
has_penetrance: FYPO_EXT:0000002 medium
 +
|
 +
 +
 
 +
|- class="tableEdit_footer"
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|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.12174.Z57e009fe29be7&page=12174&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
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Latest revision as of 14:39, 14 June 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe ubr1delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: ubr1delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 ubr1delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:5527

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+ubr1delta -h+/h+

Condition differences:

no differences

PMID:20473289[1]

OMP_AN:11120

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+ubr1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:13929

OMP:0007736

increased septation index

Relative to: OMP_AN:1028

Genotype differences:

+ubr1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:14438

OMP:0007747

altered actin cytoskeleton morphology during vegetative growth

Relative to: OMP_AN:1028

Genotype differences:

+ubr1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:15082

OMP:0007102

more rounded shape

Relative to: OMP_AN:1028

Genotype differences:

+ubr1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:15110

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+ubr1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:22319

OMP:0007765

altered actin cortical patch localization

Relative to: OMP_AN:1028

Genotype differences:

+ubr1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:22331

OMP:0007761

altered microtubule cytoskeleton

Relative to: OMP_AN:1028

Genotype differences:

+ubr1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:26696

OMP:0007782

Relative to: OMP_AN:1028

Genotype differences:

+ubr1delta -h+/h+

Condition differences:

other:hydroxyurea? temperature:?25-32C

other:hydroxyurea

ECO:0001098

microscopy evidence

PMID:23697806[2]

CHEBI:44423 hydroxyurea

has_penetrance: FYPO_EXT:0000002 medium


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=OMP_ST:4564_!_Schizosaccharomyces_pombe_ubr1delta&oldid=116174"