Difference between revisions of "OMP ST:5827 ! Schizosaccharomyces pombe cid12delta"

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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 +
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Schizosaccharomyces pombe cid12delta
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 +
||
 +
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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 +
*Pangenome: Schizosaccharomyces pombe
 +
*Subspecies and/or strain: cid12delta
 +
*NCBI Taxonomy ID:4896
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 +
||
 +
ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 cid12delta
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 +
||
 +
PMID:20473289
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 +
||
 +
http://us.bioneer.com/products/spombe/spombeoverview.aspx
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 +
||
 +
parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
 
|-
 
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
+
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:7145
 +
|
 +
 
 +
|
 +
OMP:0007460
 +
|
 +
viable cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32cid12delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:20473289
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:12868
 +
|
 +
 
 +
|
 +
OMP:0007460
 +
|
 +
viable vegetative cell population
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32cid12delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:18621
 +
|
 +
NOT
 +
|
 +
OMP:0007713
 +
|
 +
altered vegetative cell size
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32cid12delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:19141
 +
|
 +
 
 +
|
 +
OMP:0007708
 +
|
 +
altered vegetative cell shape
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32cid12delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:19357
 +
|
 +
 
 +
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32cid12delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:26691
 +
|
 +
 
 +
|
 +
OMP:0007782
 +
|
 +
 
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+cid12delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
other:hydroxyurea?
 +
temperature:?25-32C
 +
|
 +
other:hydroxyurea
 +
|
 +
ECO:0001098
 +
|
 +
 
 +
|
 +
PMID:23697806
 +
|
 +
CHEBI:44423 hydroxyurea
 +
 
 +
has_penetrance: FYPO_EXT:0000002 medium
 +
|
 +
  
 
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Latest revision as of 13:33, 14 June 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe cid12delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: cid12delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 cid12delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:7145

OMP:0007460

viable cell

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32cid12delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

PMID:20473289[1]

OMP_AN:12868

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32cid12delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

PMID:23697806[2]

OMP_AN:18621

NOT

OMP:0007713

altered vegetative cell size

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32cid12delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:19141

OMP:0007708

altered vegetative cell shape

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32cid12delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:19357

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32cid12delta -leu1-32/leu1-32 -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:26691

OMP:0007782

Relative to: OMP_AN:1028

Genotype differences:

+cid12delta -h+/h+

Condition differences:

other:hydroxyurea? temperature:?25-32C

other:hydroxyurea

ECO:0001098

PMID:23697806[2]

CHEBI:44423 hydroxyurea

has_penetrance: FYPO_EXT:0000002 medium


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
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