OMP ST:3211 ! Schizosaccharomyces pombe ypa1delta: Difference between revisions

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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Schizosaccharomyces pombe ypa1delta
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Schizosaccharomyces pombe
*Subspecies and/or strain: ypa1delta
*NCBI Taxonomy ID:4896
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
!align=left align='left' bgcolor='#CCCCFF' |Genotype
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ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 ypa1delta
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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PMID:20473289
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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http://us.bioneer.com/products/spombe/spombeoverview.aspx
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:3820
|
 
|
OMP:0007460
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viable vegetative cell population
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+ypa1delta  -h+/h+
<hr>Condition differences:<br>
no differences
|
 
|
 
|
 
|
PMID:20473289
|
 
|
|-
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OMP_AN:9882
|
 
|
OMP:0007460
|
viable vegetative cell population
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+ypa1delta  -h+/h+
<hr>Condition differences:<br>
no differences
|
 
|
 
|
 
|
PMID:23697806
|
 
|
|-
|
OMP_AN:13936
|
 
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OMP:0007736
|
increased septation index
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+ypa1delta  -h+/h+
<hr>Condition differences:<br>
no differences
|
 
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
 
|
|-
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OMP_AN:14432
|
 
|
OMP:0007755
|
altered actin cytoskeleton during vegetative growth
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+ypa1delta  -h+/h+
<hr>Condition differences:<br>
no differences
|
 
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
 
|
|-
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OMP_AN:18499
|
NOT
|
OMP:0007713
|
altered vegetative cell size
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+ypa1delta  -h+/h+
<hr>Condition differences:<br>
no differences
|
 
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
 
|
|-
|
OMP_AN:19019
|
 
|
OMP:0007708
|
altered vegetative cell shape
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+ypa1delta  -h+/h+
<hr>Condition differences:<br>
no differences
|
 
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
 
|
|-
|
OMP_AN:19235
|
 
|
OMP:0007716
|
viable vegetative cell
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+ypa1delta  -h+/h+
<hr>Condition differences:<br>
no differences
|
 
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
 
|
|-
|
OMP_AN:26674
|
 
|
OMP:0007788
|
 
|
Relative to: OMP_AN:1028
 
<hr>Genotype differences:<br>
+ypa1delta  -h+/h+
<hr>Condition differences:<br>
:?
temperature:?25-32C
|
 
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
 
|


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Latest revision as of 17:26, 11 June 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe ypa1delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: ypa1delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 ypa1delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:3820

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+ypa1delta -h+/h+

Condition differences:

no differences

PMID:20473289[1]

OMP_AN:9882

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+ypa1delta -h+/h+

Condition differences:

no differences

PMID:23697806[2]

OMP_AN:13936

OMP:0007736

increased septation index

Relative to: OMP_AN:1028

Genotype differences:

+ypa1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:14432

OMP:0007755

altered actin cytoskeleton during vegetative growth

Relative to: OMP_AN:1028

Genotype differences:

+ypa1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:18499

NOT

OMP:0007713

altered vegetative cell size

Relative to: OMP_AN:1028

Genotype differences:

+ypa1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:19019

OMP:0007708

altered vegetative cell shape

Relative to: OMP_AN:1028

Genotype differences:

+ypa1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:19235

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+ypa1delta -h+/h+

Condition differences:

no differences

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:26674

OMP:0007788

Relative to: OMP_AN:1028

Genotype differences:

+ypa1delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]


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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed
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