Difference between revisions of "OMP ST:4167 ! Schizosaccharomyces pombe nop52delta"

Latest revision as of 11:55, 11 June 2018

Strain Summary

Strain Name	Schizosaccharomyces pombe nop52delta
Synonyms
Taxon Information	Pangenome: Schizosaccharomyces pombe Subspecies and/or strain: nop52delta NCBI Taxonomy ID:4896
Genotype	ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 nop52delta
Strain Reference	PMID:20473289^[1]
Strain availability	http://us.bioneer.com/products/spombe/spombeoverview.aspx
Ancestry	parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
Annotated phenotypes
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Notes

Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	ECO ID	ECO term name	Reference
OMP_AN:5023		OMP:0007460	viable vegetative cell population	Relative to: OMP_AN:1028 Genotype differences: +nop52delta -h+/h+ Condition differences: ? temperature:?25-32C			PMID:20473289^[1]
OMP_AN:12067		OMP:0007460	viable vegetative cell population	Relative to: OMP_AN:1028 Genotype differences: +nop52delta -h+/h+ Condition differences: ? temperature:?25-32C			PMID:23697806^[2]
OMP_AN:14424		OMP:0007755	altered actin cytoskeleton during vegetative growth	Relative to: OMP_AN:1028 Genotype differences: +nop52delta -h+/h+ Condition differences: ? temperature:?25-32C	ECO:0001098	microscopy evidence	PMID:23697806^[2]
OMP_AN:14991		OMP:0007714	curving vegetative cell	Relative to: OMP_AN:1028 Genotype differences: +nop52delta -h+/h+ Condition differences: ? temperature:?25-32C	ECO:0001098	microscopy evidence	PMID:23697806^[2]
OMP_AN:15025		OMP:0007716	viable vegetative cell	Relative to: OMP_AN:1028 Genotype differences: +nop52delta -h+/h+ Condition differences: ? temperature:?25-32C	ECO:0001098	microscopy evidence	PMID:23697806^[2]
OMP_AN:17677	NOT	OMP:0007715	altered vegetative cell morphology	Relative to: OMP_AN:1028 Genotype differences: +nop52delta -h+/h+ Condition differences: ? temperature:?25-32C	ECO:0001098	microscopy evidence	PMID:23697806^[2]
OMP_AN:21701		OMP:0007716	viable vegetative cell	Relative to: OMP_AN:1028 Genotype differences: +nop52delta -h+/h+ Condition differences: ? temperature:?25-32C	ECO:0001098	microscopy evidence	PMID:23697806^[2]
OMP_AN:22326		OMP:0007765	altered actin cortical patch localization	Relative to: OMP_AN:1028 Genotype differences: +nop52delta -h+/h+ Condition differences: ? temperature:?25-32C	ECO:0001098	microscopy evidence	PMID:23697806^[2]
OMP_AN:22336		OMP:0007761	altered microtubule cytoskeleton	Relative to: OMP_AN:1028 Genotype differences: +nop52delta -h+/h+ Condition differences: ? temperature:?25-32C	ECO:0001098	microscopy evidence	PMID:23697806^[2]
OMP_AN:26664		OMP:0007788		Relative to: OMP_AN:1028 Genotype differences: +nop52delta -h+/h+ Condition differences: ? temperature:?25-32C	ECO:0001098		PMID:23697806^[2]
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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

↑ ^1.0 ^1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page

[PMID:20473289-1] 1.0 ^1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page

[PMID:23697806-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page

[1]

[2]

Difference between revisions of "OMP ST:4167 ! Schizosaccharomyces pombe nop52delta"

Latest revision as of 11:55, 11 June 2018

Contents

Strain Summary

Notes

Phenotype Annotation

Additional Information

Links

References

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@@ Line 28: / Line 28: @@
 !align=left align='left' bgcolor='#CCCCFF' |Genotype
 ||
-ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32nop52delta
+ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 nop52delta
 |-
 !align=left align='left' bgcolor='#CCCCFF' |Strain Reference
@@ Line 74: / Line 74: @@
 OMP:0007460
 |
-viable cell
+viable vegetative cell population
 |
 Relative to: OMP_AN:1028
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32nop52delta  -leu1-32/leu1-32 -h+/h+
++nop52delta  -h+/h+
 <hr>Condition differences:<br>
-no differences
+:?
+temperature:?25-32C
 |
@@ Line 107: / Line 108: @@
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32nop52delta  -leu1-32/leu1-32 -h+/h+
++nop52delta  -h+/h+
 <hr>Condition differences:<br>
-no differences
+:?
+temperature:?25-32C
 |
@@ Line 124: / Line 126: @@
 |-
 |
-OMP_AN:12068
+OMP_AN:14424
 |
 |
-OMP:0007460
+OMP:0007755
 |
-viable vegetative cell population
+altered actin cytoskeleton during vegetative growth
 |
 Relative to: OMP_AN:1028
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32nop52delta  -leu1-32/leu1-32 -h+/h+
++nop52delta  -h+/h+
 <hr>Condition differences:<br>
-no differences
+:?
+temperature:?25-32C
+|
+|
+ECO:0001098
+|
+microscopy evidence
+|
+PMID:23697806
+|
+|
+|-
+|
+OMP_AN:14991
 |
 |
+OMP:0007714
+|
+curving vegetative cell
+|
+Relative to: OMP_AN:1028
+<hr>Genotype differences:<br>
++nop52delta  -h+/h+
+<hr>Condition differences:<br>
+:?
+temperature:?25-32C
 |
+|
+ECO:0001098
+|
+microscopy evidence
 |
 PMID:23697806
@@ Line 152: / Line 184: @@
 |-
 |
-OMP_AN:14424
+OMP_AN:15025
 |
 |
-OMP:0007755
+OMP:0007716
 |
-altered actin cytoskeleton during vegetative growth
+viable vegetative cell
 |
 Relative to: OMP_AN:1028
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32nop52delta  -leu1-32/leu1-32 -h+/h+
++nop52delta  -h+/h+
 <hr>Condition differences:<br>
-no differences
+:?
+temperature:?25-32C
 |
@@ Line 180: / Line 213: @@
 |-
 |
-OMP_AN:14991
+OMP_AN:17677
 |
+NOT
 |
-OMP:0007714
+OMP:0007715
 |
-curving of vegetative cell
+altered vegetative cell morphology
 |
 Relative to: OMP_AN:1028
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32nop52delta  -leu1-32/leu1-32 -h+/h+
++nop52delta  -h+/h+
 <hr>Condition differences:<br>
-no differences
+:?
+temperature:?25-32C
 |
@@ Line 208: / Line 242: @@
 |-
 |
-OMP_AN:15025
+OMP_AN:21701
 |
@@ Line 219: / Line 253: @@
 <hr>Genotype differences:<br>
-+leu1-32/leu1-32nop52delta  -leu1-32/leu1-32 -h+/h+
++nop52delta  -h+/h+
 <hr>Condition differences:<br>
-no differences
+:?
+temperature:?25-32C
 |
@@ Line 228: / Line 263: @@
 |
 microscopy evidence
+|
+PMID:23697806
+|
+|
+|-
+|
+OMP_AN:22326
+|
+|
+OMP:0007765
+|
+altered actin cortical patch localization
+|
+Relative to: OMP_AN:1028
+<hr>Genotype differences:<br>
++nop52delta  -h+/h+
+<hr>Condition differences:<br>
+:?
+temperature:?25-32C
+|
+|
+ECO:0001098
+|
+microscopy evidence
+|
+PMID:23697806
+|
+|
+|-
+|
+OMP_AN:22336
+|
+|
+OMP:0007761
+|
+altered microtubule cytoskeleton
+|
+Relative to: OMP_AN:1028
+<hr>Genotype differences:<br>
++nop52delta  -h+/h+
+<hr>Condition differences:<br>
+:?
+temperature:?25-32C
+|
+|
+ECO:0001098
+|
+microscopy evidence
+|
+PMID:23697806
+|
+|
+|-
+|
+OMP_AN:26664
+|
+|
+OMP:0007788
+|
+|
+Relative to: OMP_AN:1028
+<hr>Genotype differences:<br>
++nop52delta  -h+/h+
+<hr>Condition differences:<br>
+:?
+temperature:?25-32C
+|
+|
+ECO:0001098
+|
 |
 PMID:23697806