Difference between revisions of "OMP ST:4167 ! Schizosaccharomyces pombe nop52delta"

From OMPwiki
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(Table edited by Sandyl 27 via TableEdit)
 
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
||
 
||
−
ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32nop52delta
+
ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 nop52delta
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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<noinclude>
 
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<!-- OMP category tags -->[[Category:OMP ST:1112 ! Schizosaccharomyces pombe SP286 derivatives]]
 
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Line 77: Line 74:
 
OMP:0007460
 
OMP:0007460
 
|
 
|
−
viable cell
+
viable vegetative cell population
 
|
 
|
 
Relative to: OMP_AN:1028
 
Relative to: OMP_AN:1028
  
 
<hr>Genotype differences:<br>
 
<hr>Genotype differences:<br>
−
+leu1-32/leu1-32nop52delta -leu1-32/leu1-32 -h+/h+
+
+nop52delta -h+/h+
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
no differences
+
:?
 +
temperature:?25-32C
 
|
 
|
  
Line 110: Line 108:
  
 
<hr>Genotype differences:<br>
 
<hr>Genotype differences:<br>
−
+leu1-32/leu1-32nop52delta -leu1-32/leu1-32 -h+/h+
+
+nop52delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
   
 +
|-  
 +
|
 +
OMP_AN:14424
 +
|
 +
 
 +
|
 +
OMP:0007755
 +
|
 +
altered actin cytoskeleton during vegetative growth
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+nop52delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:14991
 +
|
 +
 
 +
|
 +
OMP:0007714
 +
|
 +
curving vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+nop52delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:15025
 +
|
 +
 
 +
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+nop52delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:17677
 +
|
 +
NOT
 +
|
 +
OMP:0007715
 +
|
 +
altered vegetative cell morphology
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+nop52delta  -h+/h+
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
no differences
+
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:21701
 
|
 
|
  
 
|
 
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
  
 +
<hr>Genotype differences:<br>
 +
+nop52delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:22326
 +
|
 +
 +
|
 +
OMP:0007765
 +
|
 +
altered actin cortical patch localization
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+nop52delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:22336
 +
|
 +
 +
|
 +
OMP:0007761
 +
|
 +
altered microtubule cytoskeleton
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+nop52delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:26664
 +
|
 +
 +
|
 +
OMP:0007788
 +
|
 +
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+nop52delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 +
|
 +
ECO:0001098
 
|
 
|
  
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Latest revision as of 11:55, 11 June 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe nop52delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: nop52delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 nop52delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:5023

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+nop52delta -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:20473289[1]

OMP_AN:12067

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+nop52delta -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:23697806[2]

OMP_AN:14424

OMP:0007755

altered actin cytoskeleton during vegetative growth

Relative to: OMP_AN:1028

Genotype differences:

+nop52delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:14991

OMP:0007714

curving vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+nop52delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:15025

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+nop52delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:17677

NOT

OMP:0007715

altered vegetative cell morphology

Relative to: OMP_AN:1028

Genotype differences:

+nop52delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:21701

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+nop52delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:22326

OMP:0007765

altered actin cortical patch localization

Relative to: OMP_AN:1028

Genotype differences:

+nop52delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:22336

OMP:0007761

altered microtubule cytoskeleton

Relative to: OMP_AN:1028

Genotype differences:

+nop52delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:26664

OMP:0007788

Relative to: OMP_AN:1028

Genotype differences:

+nop52delta -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

PMID:23697806[2]


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=OMP_ST:4167_!_Schizosaccharomyces_pombe_nop52delta&oldid=116108"