OMP summary

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Annotations directly to each OMP term can be seen as members of the Category pages.

Annotations from Publications

This table shows OMP annotations based on publications


Page Phenotype of Taxon Information Genotype Information (if known) Condition Information OMP ID OMP Term Name ECO ID ECO Term Name Notes Status
PMID:6768753 a mutation or genetic difference within a strain
  • Taxon:
  • Strain: K-12
  • Substrain: KBT001
  • Genotype of Reference Strain: btuA+ (F-, leu,pro, lysA,trp,purE, metE, str, lac,tonA)
  • Genotype of Experimental Strain : btuA41 (F-, leu,pro, lysA,trp,purE, metE, str, lac,tonA)
  • Reference Condition:
OMP:0007017

abolished nutrient import

ECO:00000134

transport assay evidence

btuA41 prevents uptake of tritiated cyanocobalamin (Figure 1B)

CHEBI:17439

mutant strain name is KBT041


PMID:21181144 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: BW25113
  • NCBI Taxon ID: 679895
  • Genotype of Reference Strain: yeaI+
  • Genotype of Experimental Strain : yeaI(del)
  • Reference Condition: M9C, 37C, 7 h, microtiter dish wells
  • Experimental Condition: M9C, 37C, 7h, microtiter dish wells
OMP:0007020

increased biofilm formation

ECO:0000182

in vitro culture assay evidence

Figure 1b, crystal violet biofilm assay

complete

PMID:21181144 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K12
  • Substrain: BW25113
  • NCBI Taxon ID: 679895
  • Genotype of Reference Strain: yeaI+
  • Genotype of Experimental Strain : yeaI(del)
  • Reference Condition: LB, 37C, 7 h
  • Experimental Condition: LB, 37C, 7 h
OMP:0007020

increased biofilm formation

ECO:0000182

in vitro culture assay evidence

Figure 1a

complete

PMID:19543378 a mutation or genetic difference within a strain
  • Taxon: Pseudomonas aeruginosa
  • Strain: PA14
  • Substrain: PA3885
  • NCBI Taxon ID: 652611
  • Genotype of Reference Strain: tpbA+
  • Genotype of Experimental Strain : tpbA-
  • Reference Condition: after 8 hours in LB at 37C
  • Experimental Condition: after 8 hours in LB at 37C
OMP:0007020

increased biofilm formation

ECO:0000182

in vitro culture assay evidence

Figure 1A- by 147-fold, crystal violet staining

complete

PMID:19543378 a mutation or genetic difference within a strain
  • Taxon: Pseudomonas aeruginosa
  • Strain: PA14
  • Substrain: PA3885
  • NCBI Taxon ID: 652611
  • Genotype of Reference Strain: tpbA+
  • Genotype of Experimental Strain : tpbA-
  • Reference Condition: 37C and 25C
  • Experimental Condition: 37C and 25C
OMP:0000158

curled margin

ECO:0000182

in vitro culture assay evidence

Fig. 3A, congo red plates


PMID:19543378 a mutation or genetic difference within a strain
  • Taxon: Pseudomonas aeruginosa
  • Strain: PA14
  • Substrain: PA3885
  • NCBI Taxon ID: 652611
  • Genotype of Reference Strain: tpbA+
  • Genotype of Experimental Strain : tpbA-
  • Reference Condition: 37C after 24hours
  • Experimental Condition: 37C after 24hours
OMP:0006167

abolished cell motility by swarming

ECO:0000182

in vitro culture assay evidence

figure 2A, BM-2 agar, solid media


PMID:19543378 a mutation or genetic difference within a strain
  • Taxon: Pseudomonas aeruginosa
  • Strain: PA14
  • Substrain: PA3885
  • NCBI Taxon ID: 652611
  • Genotype of Reference Strain: tpbA+
  • Genotype of Experimental Strain : tpbA-
  • Reference Condition: 37C after 24hours
  • Experimental Condition: 37C after 24hours
OMP:0007093

decreased cell motility by swimming

ECO:0000182

in vitro culture assay evidence

Figure 2B, .3% agar plates


PMID:19543378 a mutation or genetic difference within a strain
  • Taxon: Pseudomonas aeruginosa
  • Strain: PA14
  • Substrain: PA3885
  • NCBI Taxon ID: 652611
  • Genotype of Reference Strain: tpbA+
  • Genotype of Experimental Strain : tpbA-
  • Reference Condition: 37C and 25C
  • Experimental Condition: 37C and 25C
OMP:0000116

pigmented colony

ECO:0000182

in vitro culture assay evidence

Fig. 3A, congo red plates


PMID:19543378 a mutation or genetic difference within a strain
  • Taxon: Pseudomonas aeruginosa
  • Strain: PA14
  • Substrain: PA3885
  • NCBI Taxon ID: 652611
  • Genotype of Reference Strain: tpbA+
  • Genotype of Experimental Strain : tpbA-
  • Reference Condition: 37C and 25C
  • Experimental Condition: 37C and 25C
OMP:0000116

pellicle formation

ECO: 0000304

traceable author statement used in manual assertion


PMID:7748952 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: N3431
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rne
  • Genotype of Experimental Strain : rne3071
  • Reference Condition:
OMP:0000267

increased gene expression

This temperature sensitive mutation up regulates mutL-miaA which are co transcribed, and up regulates transcription of promoters Pmia and P1hfq by a factor of 3, 7 and 8 fold. Table 2.


PMID:7748952 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: TX2568 (Cmr) & TX2569 (Kmr)
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mutL
  • Genotype of Experimental Strain : mutL:omega(Kmr OR Cmr);BsaAI
  • Reference Condition:
OMP:0000253

gene expression phenotype

The polar omega cassettes blocked mutL-miaA transcription and caused the full-lengthened protected species to disappear, Fig. 2 lanes 3 and 4.


PMID:10940054 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655
  • NCBI Taxon ID: 511145
  • Genotype of Reference Strain: mutS+
  • Genotype of Experimental Strain : mutS+ overexpression
  • Reference Condition:
OMP:0005069

decreased mutation frequency

Overexpression of MutS decreases the rate of GC to TA transversion mutations.


PMID:10940054 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655
  • NCBI Taxon ID: 511145
  • Genotype of Reference Strain: mutY::mini-Tn10(Tetr) mutS+
  • Genotype of Experimental Strain : mutY::mini-Tn10(Tetr) mutS+ overexpression
  • Reference Condition:
OMP:0005069

decreased mutation frequency

Overexpression of MutS decreases the rate of GC to TA transversion mutations in a strain lacking MutY.


PMID:5335887 a single strain under different conditions
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AX14
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: lon+
  • Genotype of Experimental Strain : lon-
  • Reference Condition: UV radiation
  • Experimental Condition: UV radiation
OMP:0007168

abolished septation

ECO:0000174

mutant physiological response evidence

Fig. 1 and data not shown. Strains used 2e01c and AX14=2e01c lon-


PMID:5335887 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AX14
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: lon+
  • Genotype of Experimental Strain : lon-
  • Reference Condition: UV radiation
  • Experimental Condition: UV radiation
OMP:0005098

decreased resisance to UV radiation

ECO:0000174

mutant physiological response evidence

Fig. 3


PMID:21149452 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: BW25113
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tatC+
  • Genotype of Experimental Strain : tatC(del)::kan
  • Reference Condition:
OMP:0007173

decreased resistance to antimicrobial peptide

ECO:0000016

loss-of-function mutant phenotype evidence

tatC(del) increases susceptibility to protamine (data not shown). tatC(del) mutant was from the Keio collection.


PMID:21149452 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tatA+
  • Genotype of Experimental Strain : tatA(del)::kan
  • Reference Condition:
OMP:0007173

decreased resistance to antimicrobial peptide

ECO:0000016

loss-of-function mutant phenotype evidence

tatA(del) mutant has increased susceptibility to protamine (data not shown). Mutant was from the Keio collection.


PMID:21149452
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tatB+
  • Genotype of Experimental Strain : tatB(del)::kan
  • Reference Condition:
OMP:0007173

decreased resistance to antimicrobial peptide

ECO:0000016

loss-of-function mutant phenotype evidence

taatB(del) mutant has increased susceptibility to protamine (data not shown). The mutant strain was from the Keio collection.


PMID:21149452 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: amiA+
  • Genotype of Experimental Strain : ami(del)::lam
  • Reference Condition: 0.8 mg/ml protamine
  • Experimental Condition: same
OMP:0007173

decreased resistance to antimicrobial peptide

ECO:0000016

loss-of-function mutant phenotype evidence

Increased susceptibility to protamine (results in text). Mutant was from the Keio collection.


PMID:21149452 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain:
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: amiC+
  • Genotype of Experimental Strain : amiC(del)::kan
  • Reference Condition: protamine (0.8 mg/ml)
  • Experimental Condition: same
OMP:0007173

decreased resistance to antimicrobial peptide

ECO:0000016

loss-of-function mutant phenotype evidence

Increased susceptibility to protamine (results in text). Mutant was from the Keio collection.


PMID:20660686 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655 relA(del)
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: recA+
  • Genotype of Experimental Strain : recA(del)
  • Reference Condition:
OMP:0006040

decreased resistance to quinolone

ECO:0000016

loss-of-function mutant phenotype evidence

The recA(del) mutation reduced the MIC of levofloxacin (CHEBI:63598) to 25% that of the recA+ parent (described in text).


PMID:22081393 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: LL402
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: erpA
  • Genotype of Experimental Strain : erpA(del)
  • Reference Condition:
OMP:0007185

decreased anaerobic respiration

ECO:0000016

loss-of-function mutant phenotype evidence

Deletion of erpA inactivates both Fdh-N and Nar enzymes, Table 2.


PMID:22081393 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: CP1223
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: sufA
  • Genotype of Experimental Strain : sufA(del)
  • Reference Condition:
OMP:0007184

increased anaerobic respiration

ECO:0000016

loss-of-function mutant phenotype evidence

The sufA(del) mutation increases activity of both Fdh-N and Nar-Table 2.


PMID:22081393 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: CP477
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: IscA
  • Genotype of Experimental Strain : IscA(del)
  • Reference Condition:
OMP:0007185

decreased anaerobic respiration

ECO:0000016

loss-of-function mutant phenotype evidence

Deletion of IscA strongly reduces activity of both Fdh-N and Nar enzymes-Table 2. Multicopy IscA could partially compensate for lack of ErpA with respect to Fdh-N activity but not Nar activity.


PMID:21768111 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: slyA+
  • Genotype of Experimental Strain : slyA(del)::kan
  • Reference Condition:
OMP:0000028

decreased number of pili

Fig. 9-yeast agglutination assay


PMID:21768111 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: slyA+
  • Genotype of Experimental Strain : slyA(del)::kan
  • Reference Condition:
OMP:0000268

decreased gene expression

Fig. 2-decreased expression of FimB-LacZ fusion


PMID:21212055 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: ME12 recA(del)::kan
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: recA+
  • Genotype of Experimental Strain : recA(del)::kan
  • Reference Condition: no antibiotic
  • Experimental Condition: sublethal concentration of antibiotic
OMP:0005069

decreased mutation frequency

ME12 = MG1655 lacZ(del)C-lacZ(del)N-yfp

Fig. 1 shows results for mutants with increased resistance to rifampicin and fosfomycin. Largest effects seen for sublethal conc. of trimethoprim, sulfamethoxazole, and trimethoprim + sulfamethoxazole.


PMID:21212055 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: ME12
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain:
  • Reference Condition:no antibiotic
  • Experimental Condition: antibiotic
OMP:0006170

decreased binary fission

Figure 3: Treatment for 4 h with mitomycin C, ceftazidime, ciprofloxacin, or trimethoprim caused filamentation.

ME12 = MG1655 lacZ(del)C-lacZ(del)N-yfp


PMID:20585771 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: ATCC 10798
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: gldA+-HisTag
  • Genotype of Experimental Strain : gldAM6-HisTag
  • Reference Condition:
OMP:0005102

increased enzyme activity

Table 5: The M6 glycerol dehydrogenase has increased catalytic activity on racemic 1, 3-butadiol for the bioproduction of the pharmaceutical intermediate 4-hydroxy-2-butanone.

UniProtKB:P0A9S5- GLDA_ECOLI


PMID:21541325 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JLS1024
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mdtB+
  • Genotype of Experimental Strain : mdtB774(del)::kan
  • Reference Condition:
OMP:0005077

decreased resistance to acidic pH stress

Figure 1: decreased survival at pH 2.

JLS1024 = W3110 mdtB774(del)::kan (Keio JW2060)


PMID:21541325 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JLS1015
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tolC+
  • Genotype of Experimental Strain : tolC732(del)::kan
  • Reference Condition:
OMP:0005077

decreased resistance to acidic pH stress

Figure 1: decreased survival at pH 2.

JLS1015 = W3110 tolC732(del)::kan (Keio JW5503)


PMID:21541325 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JLS1027
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: emrB+
  • Genotype of Experimental Strain : emrB767(del)::kan
  • Reference Condition:
OMP:0005077

decreased resistance to acidic pH stress

Figure 1: decreased survival at pH 2.

JLS1027 = W3110 emrB767(del)::kan (Keio JW2661)


PMID:21541325 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JLS1015
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tolC+
  • Genotype of Experimental Strain : tolC732(del)::kan
  • Reference Condition:
OMP:0007008

decreased growth at acidic pH

Figure 4: no growth at pH 4.5

JLS1015 = W3110 tolC732(del)::kan (Keio JW5503)


PMID:21541325 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tolC+
  • Genotype of Experimental Strain : tolC::Tn10
  • Reference Condition:
OMP:0007118

decreased transcription

ECO:0000106

Northern assay evidence

Figure 2B: undetectable level of gadA mRNA at pH 5.5


PMID:21541325 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tolC+
  • Genotype of Experimental Strain : tolC::Tn10
  • Reference Condition:
OMP:0000268

decreased gene expression

Figures 2A, 2C: Decreased glutamate decarboxylase activity and decreased GadA/B protein levels at pH 5.5.


PMID:16824196 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MK6168
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: fur+
  • Genotype of Experimental Strain : fur(del)::kan
  • Reference Condition:
OMP:0005068

increased mutation frequency

Figure 4: aerobic growth conditions.

MK6168 = MK811 fur(del)::kan The fur(del)::kan allele was transduced from QC1732.[1]


PMID:16824196 a single strain under different conditions
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MK811
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain:
  • Reference Condition: aerobic
  • Experimental Condition: anaerobic
OMP:0005069

decreased mutation frequency

Figure 1: decreased frequency of base substitution mutations

MK811 = MG1655 cysE::rpsL (735 bp DNA fragment containing rpsL+)


PMID:21453489 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: greA+
  • Genotype of Experimental Strain : greA-D41A
  • Reference Condition:
OMP:0005050

decreased frequency of homologous recombination

Figure 1 and Figure 2: decreased lambda Red-mediated recombination


PMID:21453489 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: greA+
  • Genotype of Experimental Strain : greA-E44K
  • Reference Condition:
OMP:0005050

decreased frequency of homologous recombination

Figure 1 and Figure 2: decreased lambda Red-mediated recombination


PMID:21453489 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: greA+
  • Genotype of Experimental Strain : greA-D41N
  • Reference Condition:
OMP:0005050

decreased frequency of homologous recombination

Figure 1 and Figure 2: decreased lambda Red-mediated recombination


PMID:21453489 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: greA+
  • Genotype of Experimental Strain : greA(del)
  • Reference Condition:
OMP:0005050

decreased frequency of homologous recombination

Figure 1 and Figure 2: decreased lambda Red-mediated recombination


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1885
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB+
  • Genotype of Experimental Strain : uvrB5
  • Reference Condition: UV-A + 8-MOP (0.1 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference figure 1; 8-MOP=bifunctional 8-methoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1886
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA+
  • Genotype of Experimental Strain : uvrA6
  • Reference Condition: UV-A + 8-MOP (0.1 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference figure 1; 8-MOP=bifunctional 8-methoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1884
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrc+
  • Genotype of Experimental Strain : uvrC34
  • Reference Condition: UV-A + 8-MOP (0.1 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference figure 1; 8-MOP=bifunctional 8-methoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1885
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB+
  • Genotype of Experimental Strain : uvrB5
  • Reference Condition: UV-A + 3-CPs (20 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference figure 2; 3-CPs=mono-functional 3-carbethoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1886
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA+
  • Genotype of Experimental Strain : uvrA6
  • Reference Condition: UV-A + 3-CPs (20 microgram ml-1)
OMP:0007198

UV-A radiation resistance

ECO:0000095

cell growth assay evidence

Reference figure 2; 3-CPs=mono-functional 3-carbethoxypsoralen; phenotype is unchanged


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1884
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC+
  • Genotype of Experimental Strain : uvrC34
  • Reference Condition: UV-A + 3-CPs (20 microgram ml-1)
OMP:0007198

UV-A radiation resistance

ECO:0000095

cell growth assay evidence

Reference figure 2; 3-CPs=mono-functional 3-carbethoxypsoralen; phenotype is unchanged


PMID:20004108 a single strain under different conditions
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1157
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA+ uvrB+ uvrC+
  • Reference Condition: Treatment with UV-A
  • Experimental Condition: Treatment with UV-A + 8-MOP (0.1 microgram ml-1)
OMP:0007198

UV-A radiation resistance

ECO:0000095

cell growth assay evidence

Inferred by curator from figure 1; 8-MOP=bifunctional 8-methoxypsoralen; phenotype is unchanged


PMID:20004108 a single strain under different conditions
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1157
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA+,uvrB+,uvrC+
  • Reference Condition: Treatment with UV-A
  • Experimental Condition: Treatment with UV-A + 3-CPs (20 microgram ml-1)
OMP:0007198

UV-A radiation resistance

ECO:0000095

cell growth assay evidence

Inferred by curator from figure 2; 3-CPs=monofunctional 3-carbethoxypsoralen; phenotype is unchanged


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1885
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB+
  • Genotype of Experimental Strain : uvrB5
  • Reference Condition: UV-C treatment
OMP:0007201

decreased resistance to UV-C radiation

ECO:0000095

cell growth assay evidence

Reference figure 3


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1884
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC+
  • Genotype of Experimental Strain : uvrC34
  • Reference Condition: UV-C treatment
OMP:0007201

decreased resistance to UV-C radiation

ECO:0000095

cell growth assay evidence

Reference figure 3


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1886
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA+
  • Genotype of Experimental Strain : uvrA6
  • Reference Condition: UV-C treatment
OMP:0007201

decreased resistance to UV-C radiation

ECO:0000095

cell growth assay evidence

Reference figure 3


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC3890
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB+
  • Genotype of Experimental Strain : uvrB (del)
  • Reference Condition: UV-A + 8-MOP (.1 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference figure 1; 8-MOP=bifunctional 8-methoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC3890
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB+
  • Genotype of Experimental Strain : uvrB (del)
  • Reference Condition: UV-A + 3-CPs (20 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference figure 2; 3-CPs=mono-functional 3-carbethoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF604
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC34 uvrA+
  • Genotype of Experimental Strain : uvrC34 uvrA::Tn10
  • Reference Condition: UV-A + 8-MOP (.1 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference figure 1; 8-MOP=bifunctional 8-methoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF604
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC34 uvrA+
  • Genotype of Experimental Strain : uvrC34 uvrA::Tn10
  • Reference Condition: UV-A + 3-CPs (20 microgram ml-1)
OMP:0007198

UV-A radiation resistance

ECO:0000095

cell growth assay evidence

Reference figure 2; 3-CPs=monofunctional 3-carbethoxypsoralen; phenotype is unchanged


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF574
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA+
  • Genotype of Experimental Strain : uvrA::Tn10
  • Reference Condition: UV-A + 8-MOP (.1 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference figure 1; 8-MOP=bifunctional 8-methoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF574
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA+
  • Genotype of Experimental Strain : uvrA::Tn10
  • Reference Condition: UV-A + 3-CPs (20 microgram ml-1)
OMP:0007198

UV-A radiation resistance

ECO:0000095

cell growth assay evidence

Reference figure 2; 3-CPs=monofunctional 3-carbethoxypsoralen; phenotype is unchanged


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF573
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC+
  • Genotype of Experimental Strain : uvrC::Tn10
  • Reference Condition: UV-A + 8-MOP (.1 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference figure 1; 8-MOP=bifunctional 8-methoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF573
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC+
  • Genotype of Experimental Strain : uvrC::Tn10
  • Reference Condition: UV-A + 3-CPs (20 microgram ml-1)
OMP:0007198

UV-A radiation resistance

ECO:0000095

cell growth assay evidence

Reference figure 2; 3-CPs=monofunctional 3-carbethoxypsoralen; phenotype is unchanged


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC3890
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB+
  • Genotype of Experimental Strain : uvrB (del)
  • Reference Condition: UV-C treatment
OMP:0007201

decreased resistance to UV-C radiation

ECO:0000095

cell growth assay evidence

Reference figure 3


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF604
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC34 uvrA+
  • Genotype of Experimental Strain : uvrC34 uvrA:Tn10
  • Reference Condition: UV-C treatment
OMP:0007201

decreased resistance to UV-C radiation

ECO:0000095

cell growth assay evidence

Reference figure 3


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF574
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA+
  • Genotype of Experimental Strain : uvrA::Tn10
  • Reference Condition: UV-C treatment
OMP:0007201

decreased resistance to UV-C radiation

ECO:0000095

cell growth assay evidence

Reference figure 3


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF573
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC+
  • Genotype of Experimental Strain : uvrC::Tn10
  • Reference Condition: UV-C treatment
OMP:0007201

decreased resistance to UV-C radiation

ECO:0000095

cell growth assay evidence

Reference figure 3


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF604
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC34 uvrA+
  • Genotype of Experimental Strain : uvrC34 uvrA::Tn10
  • Reference Condition: UV-A + 8-MOP (0.1 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference section 3.1; 8-MOP=bifunctional 8-methoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF604
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC34 uvrA+
  • Genotype of Experimental Strain : uvrC34 uvrA::Tn10
  • Reference Condition: UV-A + 3-CPs (20 microgram ml-1)
OMP:0007198

UV-A radiation resistance

ECO:0000095

cell growth assay evidence

Reference section 3.1; 3-CPs=monofunctional 3-carbethoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF603
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB (del) uvrA+
  • Genotype of Experimental Strain : uvrB (del) uvrA::Tn10
  • Reference Condition: UV-A + 8-MOP (0.1 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference section 3.1; 8-MOP=bifunctional 8-methoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF603
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB (del) uvrA+
  • Genotype of Experimental Strain : uvrB (del) uvrA::Tn10
  • Reference Condition: UV-A + 3-CPs (20 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference section 3.1; 3-CPs=monofunctional 3-carbethoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF605
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB (del) uvrC+
  • Genotype of Experimental Strain : uvrB (del) uvrC::Tn10
  • Reference Condition: UV-A + 8-MOP (0.1 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference section 3.1; 8-MOP=bifunctional 8-methoxypsoralen


PMID:20004108 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RJF605
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB (del) uvrC+
  • Genotype of Experimental Strain : uvrB (del) uvrC::Tn10
  • Reference Condition: UV-A + 3-CPs (20 microgram ml-1)
OMP:0007204

decreased resistance to UV-A radiation

ECO:0000095

cell growth assay evidence

Reference section 3.1; 3-CPs=monofunctional 3-carbethoxypsoralen


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNfsA uvrB+
  • Genotype of Experimental Strain : SOS-R1 pNfsA uvrB(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli; phenotype is unchanged. testing


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pYfkO uvrB+
  • Genotype of Experimental Strain : SOS-R1 pYfkO uvrB(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; Yfko (Bs)= 4-NO2 nitroreductase only, from B. licheniformis


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNemA uvrB+
  • Genotype of Experimental Strain : SOS-R1 pNemA uvrB(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NemA= 4-NO2 nitroreductase only


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNfsB uvrB+
  • Genotype of Experimental Strain : SOS-R1 pNfsB uvrB(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsB= 2-NO2 or 4-NO2 nitroreductase; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNfsA uvrB+
  • Genotype of Experimental Strain : SOS-R1 pNfsA uvrB(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumonia; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNfsA mutS+
  • Genotype of Experimental Strain : SOS-R1 pNfsA mutS(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNfsA mutS+
  • Genotype of Experimental Strain : SOS-R1 pNfsA mutS(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumoniae; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNfsB mutS+
  • Genotype of Experimental Strain : SOS-R1 pNfsB mutS(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsB= 2-NO2 or 4-NO2 nitroreductase; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNemA mutS+
  • Genotype of Experimental Strain : SOS-R1 pNemA mutS(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NemA= 4-NO2 nitroreductase only; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pYfkO mutS+
  • Genotype of Experimental Strain : SOS-R1 pYfkO mutS(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; Yfko (Bs)= 4-NO2 nitroreductase only, from B. licheniformis; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNfsA ada+ ogt+
  • Genotype of Experimental Strain : SOS-R1 pNfsA ada(del) ogt(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNfsA ada+ ogt+
  • Genotype of Experimental Strain : SOS-R1 pNfsA ada(del) ogt(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumoniae; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNfsB ada+ ogt+
  • Genotype of Experimental Strain : SOS-R1 pNfsB ada(del) ogt(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsB= 2-NO2 or 4-NO2 nitroreductase; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNemA ada+ ogt+
  • Genotype of Experimental Strain : SOS-R1 pNemA ada(del) ogt(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NemA= 4-NO2 nitroreductase only; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pYfkO ada+ ogt+
  • Genotype of Experimental Strain : SOS-R1 pYfkO ada(del) ogt(del)
  • Reference Condition: +CB1954 (50 micromolar for 3 hours) compared to 0 micromolar CB1954
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; Yfko (Bs)= 4-NO2 nitroreductase only, from B. licheniformis; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 NfsA uvrB+ mutS+ ada+ ogt+
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)
  • Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNfsA uvrB+ mutS+ ada+ ogt+
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)
  • Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumonia


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 pNfsB uvrB+ mutS+ ada+ ogt+
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)
  • Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsB= 2-NO2 or 4-NO2 nitroreductase


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 NemA uvrB+ mutS+ ada+ ogt+
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)
  • Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NemA= 4-NO2 nitroreductase only


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 YfkO uvrB+ mutS+ ada+ ogt+
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)
  • Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; Yfko (Bs)= 4-NO2 nitroreductase only, from B. licheniformis


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 NfsA uvrB(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)
  • Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli

test


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA uvrB(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumonia


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsB uvrB(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsB= 2-NO2 or 4-NO2 nitroreductase


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NemA uvrB(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NemA= 4-NO2 nitroreductase only


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 YfkO uvrB(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; Yfko (Bs)= 4-NO2 nitroreductase only, from B. licheniformis


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA mutS(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA mutS(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumonia


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsB mutS(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsB= 2-NO2 or 4-NO2 nitroreductase


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NemA mutS(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NemA= 4-NO2 nitroreductase only


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 YfkO mutS(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; Yfko (Bs)= 4-NO2 nitroreductase only, from B. licheniformis


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA ada(del) ogt(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA ada(del) ogt(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumonia


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsB ada(del) ogt(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NfsB= 2-NO2 or 4-NO2 nitroreductase


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NemA ada(del) ogt(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; NemA= 4-NO2 nitroreductase only


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 YfkO ada(del) ogt(del)
  • Reference Condition: -CB1954 (0 micromolar for 3 hours)\n\n*Experimental Condition: +CB1954 (50 micromolar for 3 hours)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 2; Yfko (Bs)= 4-NO2 nitroreductase only, from B. licheniformis


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA uvrB+\n\n*Genotype of Experimental Strain: SOS-R1 NfsA uvrB(del)
  • Reference Condition: 5-nitrofuran nitrofurazone (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 3; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA uvrB+\n\n*Genotype of Experimental Strain: SOS-R1 NfsA uvrB(del)
  • Reference Condition: 5-nitrofuran nitrofurazone (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 3; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumonia


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsB uvrB+\n\n*Genotype of Experimental Strain: SOS-R1 NfsB uvrB(del)
  • Reference Condition: 5-nitrofuran nitrofurazone (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 3; NfsB= 2-NO2 or 4-NO2 nitroreductase


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NemA uvrB+\n\n*Genotype of Experimental Strain: SOS-R1 NemA uvrB(del)
  • Reference Condition: 5-nitrofuran nitrofurazone (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 3; NemA= 4-NO2 nitroreductase only


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 YfkO uvrB+\n\n*Genotype of Experimental Strain: SOS-R1 YfkO uvrB(del)
  • Reference Condition: 5-nitrofuran nitrofurazone (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005024

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 3; Yfko (Bs)= 4-NO2 nitroreductase only, from B. licheniformis


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA uvrB+\n\n*Genotype of Experimental Strain: SOS-R1 NfsA uvrB(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 3; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA uvrB+\n\n*Genotype of Experimental Strain: SOS-R1 NfsA uvrB(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 3; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumonia; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsB uvrB+\n\n*Genotype of Experimental Strain: SOS-R1 NfsB uvrB(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 3; NfsB= 2-NO2 or 4-NO2 nitroreductase; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NemA uvrB+\n\n*Genotype of Experimental Strain: SOS-R1 NemA uvrB(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 3; NemA= 4-NO2 nitroreductase only; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 YfkO uvrB+\n\n*Genotype of Experimental Strain: SOS-R1 YfkO uvrB(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference figure 3; Yfko (Bs)= 4-NO2 nitroreductase only, from B. licheniformis; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA mutS+\n\n*Genotype of Experimental Strain: SOS-R1 NfsA mutS(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA mutS+\n\n*Genotype of Experimental Strain: SOS-R1 NfsA mutS(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumonia; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsB mutS+\n\n*Genotype of Experimental Strain: SOS-R1 NfsB mutS(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsB= 2-NO2 or 4-NO2 nitroreductase; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NemA mutS+\n\n*Genotype of Experimental Strain: SOS-R1 NemA mutS(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NemA= 4-NO2 nitroreductase only; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 YfkO mutS+\n\n*Genotype of Experimental Strain: SOS-R1 YfkO mutS(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; YfkO (Bs)= 4-NO2 nitroreductase only, from B. licheniformis; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA mutS+\n\n*Genotype of Experimental Strain: SOS-R1 NfsA mutS(del)
  • Reference Condition: 5-nitrofuran nitrofurazone(5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA mutS+\n\n*Genotype of Experimental Strain: SOS-R1 NfsA mutS(del)
  • Reference Condition: 5-nitrofuran nitrofurazone(5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumonia; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsB mutS+\n\n*Genotype of Experimental Strain: SOS-R1 NfsB mutS(del)
  • Reference Condition: 5-nitrofuran nitrofurazone(5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsB= 2-NO2 or 4-NO2 nitroreductase; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NemA mutS+\n\n*Genotype of Experimental Strain: SOS-R1 NemA mutS(del)
  • Reference Condition: 5-nitrofuran nitrofurazone(5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NemA= 4-NO2 nitroreductase only; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 YfkO mutS+\n\n*Genotype of Experimental Strain: SOS-R1 YfkO mutS(del)
  • Reference Condition: 5-nitrofuran nitrofurazone(5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; YfkO (Bs)= 4-NO2 nitroreductase only, from B. licheniformis; phenotype is unchanged

xx


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SOS-R1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: SOS-R1 NfsA ada+ ogt+
  • Genotype of Experimental Strain : SOS-R1 NfsA ada(del) ogt(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli; phenotype is unchanged; phenotype is unchanged

yy


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA ada+ ogt+\n\n*Genotype of Experimental Strain: SOS-R1 NfsA ada(del) ogt(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumonia; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsB ada+ ogt+\n\n*Genotype of Experimental Strain: SOS-R1 NfsB ada(del) ogt(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsB= 2-NO2 or 4-NO2 nitroreductase; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NemA ada+ ogt+\n\n*Genotype of Experimental Strain: SOS-R1 NemA ada(del) ogt(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NemA= 4-NO2 nitroreductase only; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 YfkO ada+ ogt+\n\n*Genotype of Experimental Strain: SOS-R1 YfkO ada(del) ogt(del)
  • Reference Condition: 5-nitroimidazole metronidazole (5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; YfkO (Bs)= 4-NO2 nitroreductase only, from B. licheniformis; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA ada+ ogt+\n\n*Genotype of Experimental Strain: SOS-R1 NfsA ada(del) ogt(del)
  • Reference Condition: 5-nitrofuran nitrofurazone(5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsA (Ec)= 2-NO2 nitroreductase only, from E. coli; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsA ada+ ogt+\n\n*Genotype of Experimental Strain: SOS-R1 NfsA ada(del) ogt(del)
  • Reference Condition: 5-nitrofuran nitrofurazone(5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsA (Kp)= 2-NO2 nitroreductase only, from K. pneumonia; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NfsB ada+ ogt+\n\n*Genotype of Experimental Strain: SOS-R1 NfsB ada(del) ogt(del)
  • Reference Condition: 5-nitrofuran nitrofurazone(5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NfsB= 2-NO2 or 4-NO2 nitroreductase; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 NemA ada+ ogt+\n\n*Genotype of Experimental Strain: SOS-R1 NemA ada(del) ogt(del)
  • Reference Condition: 5-nitrofuran nitrofurazone(5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; NemA= 4-NO2 nitroreductase only; phenotype is unchanged


PMID:20727918 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli\n\n*Strain: K-12\n\n*Substrain: SOS-R1\n\n*83333
  • Genotype of Reference Strain: SOS-R1 YfkO ada+ ogt+\n\n*Genotype of Experimental Strain: SOS-R1 YfkO ada(del) ogt(del)
  • Reference Condition: 5-nitrofuran nitrofurazone(5 micromolar for 3 hours compared to 0 micromolar)
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference section 3.3; YfkO (Bs)= 4-NO2 nitroreductase only, from B. licheniformis; phenotype is unchanged


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA2::kan dnaC+
  • Genotype of Experimental Strain : priA2::kan dnaC809, 820
  • Reference Condition:
OMP:0005055

increased frequency of site-specific recombination

Reference Table 1; Restores recombination fully compared to wild type; P1 Transduction evidence

needs eco and ref condition

PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priB+
  • Genotype of Experimental Strain : priB302(del)
  • Reference Condition:
OMP:0005056

decreased frequency of site-specific recombination

Reference Table 1; P1 Transduction evidence

needs eco and ref condition

PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priB+
  • Genotype of Experimental Strain : priB302(del)
  • Reference Condition: 20 J UV compared to 0 J
OMP:0005084

UV radiation resistance phenotype

ECO:0000095

cell growth assay evidence

Reference Table 1; phenotype is unchanged


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priB+
  • Genotype of Experimental Strain : priB302(del)
  • Reference Condition: UV-irradiation at .5 J/m^2/sec for 10 seconds
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference Table 1; phenotype is unchanged


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priC+
  • Genotype of Experimental Strain : priC303::kan
  • Reference Condition:
OMP:0005058

presence of site-specific recombination

Reference Table 1; P1 Transduction evidence

needs eco and ref condition

PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priC+
  • Genotype of Experimental Strain : priC303::kan
  • Reference Condition: 20 J UV compared to 0 J
OMP:0005084

UV radiation resistance phenotype

ECO:0000095

cell growth assay evidence

Reference Table 1; phenotype is unchanged


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priC+
  • Genotype of Experimental Strain : priC303::kan
  • Reference Condition: UV-irradiation at .5 J/m^2/sec for 10 seconds
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Reference Table 1; phenotype is unchanged


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA+
  • Genotype of Experimental Strain : priA2::kan
  • Reference Condition:
OMP:0005056

decreased frequency of site-specific recombination

Reference Table 1; P1 Transduction evidence

needs eco and ref condition

PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA+
  • Genotype of Experimental Strain : priA2::kan
  • Reference Condition: 20 J UV compared to 0 J
OMP:0005098

decreased resistance to UV radiation

ECO:0000095

cell growth assay evidence

Reference Table 1


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA+
  • Genotype of Experimental Strain : priA2::kan
  • Reference Condition: UV-irradiation at .5 J/m^2/sec for 10 seconds
OMP:0005025

increased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference Table 1


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priB+ priC+
  • Genotype of Experimental Strain : priB302(del) priC303::kan
  • Reference Condition: minimal media containing 50 micrograms ml^-1 kanamycin, 15 micrograms ml^-1 X-gal, incubation 3-4 days
OMP:0005020

increased basal expression of the SOS response

ECO:0000297

lacZ transcript localization evidence

Reference section 2 of results section


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priB+ priC+ dnaC+
  • Genotype of Experimental Strain : priB302(del) priC303::kan dnaC809
  • Reference Condition:
OMP:0005056

decreased frequency of site-specific recombination

Reference Table 1; P1 Transduction evidence

needs eco and ref condition DELETE??

PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priB+ priC+ dnaC+
  • Genotype of Experimental Strain : priB302(del) priC303::kan dnaC809
  • Reference Condition: 20 J UV compared to 0 J
OMP:0005098

decreased resistance to UV radiation

ECO:0000095

cell growth assay evidence

Reference Table 1; phenotype is unchanged

DELETE??

PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priB+ priC+ dnaC+
  • Genotype of Experimental Strain : priB302(del) priC303::kan dnaC809
  • Reference Condition: UV-irradiation at .5 J/m^2/sec for 10 seconds
OMP:0005020

increased basal expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference Table 1; phenotype is unchanged

DELETE??

PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Eschericia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priB302(del) priC303::kan dnaC+
  • Genotype of Experimental Strain : priB302(del) priC303::kan dnaC809,820
  • Reference Condition: 20 J UV compared to 0 J
OMP:0005097

increased resistance to UV radiation

ECO:0000095

Cell growth assay evidence

Reference Table 1; Restores UV resistance completely compared to wild type


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Eschericia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priB302(del) priC303::kan dnaC+
  • Genotype of Experimental Strain : priB302(del) priC303::kan dnaC809,820
  • Reference Condition: UV-irradiation at .5 J/m^2/sec for 10 seconds
OMP:0005025

decreased induced expression of the SOS response

ECO:0000297

lacZ transcript localization evidence

Reference Table 1; Restores SOS response expression completely compared to wild type


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Eschericia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priB302(del) priC303::kan dnaC+
  • Genotype of Experimental Strain : priB302(del) priC303::kan dnaC809,820
  • Reference Condition:
OMP:0005055

increased frequency of site-specific recombination

Reference Table 1; Restores recombination frequency to about half of the wild types recombination frequency

needs eco and ref condition

PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA+ priB+ priC+ dnaC+
  • Genotype of Experimental Strain : priA::kan priB302(del) priC303::kan dnaC809
  • Reference Condition: 20 J UV compared to 0 J
OMP:0005098

decreased resistance to UV radiation

ECO:0000095

cell growth assay evidence

Reference Table 1; Evidence that PriA and DnaC809 do not compete for the same substrate


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA+ priB+ priC+ dnaC+
  • Genotype of Experimental Strain : priA::kan priB302(del) priC303::kan dnaC809
  • Reference Condition: UV-irradiation at .5 J/m^2/sec for 10 seconds
OMP:0005020

increased basal expression of the SOS response

ECO:0000297

lacZ transcript localization evidence

Reference Table 1; Evidence that PriA and DnaC809 do not compete for the same substrate


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA+ priB+ priC+ dnaC+
  • Genotype of Experimental Strain : priA::kan priB302(del) priC303::kan dnaC809
  • Reference Condition:
OMP:0005056

decreased frequency of site-specific recombination

Reference Table 1; Evidence that PriA and DnaC809 do not compete for the same substrate

Needs eco and ref condition

PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA2::kan dnaC+
  • Genotype of Experimental Strain : priA2::kan dnaC809, 820
  • Reference Condition: 20 J UV compared to 0 J
OMP:0005097

increased resistance to UV radiation

ECO:0000095

cell growth assay evidence

Reference Table 1; Restored almost all of UV radiation resistance compared to wild type


PMID:10540288 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: DM4000
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA2::kan dnaC+
  • Genotype of Experimental Strain : priA2::kan dnaC809, 820
  • Reference Condition: UV-irradiation at .5 J/m^2/sec for 10 seconds
OMP:0005025

decreased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Reference Table 1; Expression still nearly twice that of the wild type


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC19002
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA2::kan recF143 dnaC+
  • Genotype of Experimental Strain : priAS::kan recF143 dnaC809
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005021

decreased basal expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Decreased relative to priA2::kan recF143 double mutant; Restored basal SOS expression to that of the recF143 mutant strain; Reference Figure 1


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC18989
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA+ recF143
  • Genotype of Experimental Strain : priA2::kan recF143
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005020

increased basal expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Increased relative to recF143 single mutant; Reference Figure 1


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC18989
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA2::kan recF+
  • Genotype of Experimental Strain : priA2::kan recF143
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005021

decreased basal expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Decreased relative to priA2::kan single mutant; Reference Figure 1


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC19002
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: priA+ recF+ dnaC+
  • Genotype of Experimental Strain : priAS::kan recF143 dnaC809
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005025

decreased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Decreased relative to wild type, stayed the same relative to priA2::kan recF143 double mutant; Reference Figure 1


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC18989
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: recO+
  • Genotype of Experimental Strain : recO1504::Tn5
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005020

increased basal expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Increased relative to wildtype; Reference Figure 2


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC18989
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: recR+
  • Genotype of Experimental Strain : recR252::Tn10-9
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005020

increased basal expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Increased relative to wildtype; Reference Figure 2


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC18989
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: recO1504::Tn5 priA+
  • Genotype of Experimental Strain : recO1504::Tn5 priA2::kan
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005020

increased basal expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Increased relative to recO single mutant; Reference Figure 2


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC18989
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: recR252::Tn10-9 priA+
  • Genotype of Experimental Strain : recR252::Tn10-9 priA2::kan
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005020

increased basal expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Increased relative to recR single mutant; Reference Figure 2


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC18989
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: recO+
  • Genotype of Experimental Strain : recO1504::Tn5
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005025

decreased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Decreased relative to wildtype; Reference Figure 2


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC18989
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: recR+
  • Genotype of Experimental Strain : recR252::Tn10-9
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005025

decreased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Decreased relative to wildtype; Reference Figure 2


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC18989
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: recO1504::Tn5 priA+
  • Genotype of Experimental Strain : recO1504::Tn5 priA2::kan
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005023

presence of an SOS response

ECO:0000297

LacZ transcript localization evidence

Stayed constant compared to recO single mutant; Reference Figure 2


PMID:8820655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC18989
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: recR252::Tn10-9 priA+
  • Genotype of Experimental Strain : recR252::Tn10-9 priA2::kan
  • Reference Condition: minimal medium at 37C; 0.5 J/m^2 s for 5 seconds
OMP:0005025

decreased induced expression of the SOS response

ECO:0000297

LacZ transcript localization evidence

Decreased relative to recR single mutant; Reference Figure 2


PMID:21630090 a single strain under different conditions
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: bolA
  • Genotype of Experimental Strain : bolA+
  • Reference Condition:
OMP:0000267

increased gene expression

5-6 fold increase in expression under oxidative stress in the planktonic phase when compared with rpoS expression, fig 7.


PMID:21630090 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: bolA
  • Genotype of Experimental Strain : bolA+
  • Reference Condition:
OMP:0000267

increased gene expression

2.2-fold incrase in the expression of bolA were seen after heat stress under biofilm and planktonic stages of growth, fig 7.


PMID:16597943 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: bssS
  • Genotype of Experimental Strain : bssS(del)
  • Reference Condition:
OMP:0000041

increased cell size

ECO:0000176

mutant visible phenotype analysis

Mutation: table 2.

  • increase biofilm mass
  • increase biofilm mass
  • increase surface coverage
  • increase mean thickness


PMID:16597943 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: bssR
  • Genotype of Experimental Strain : bssR(del)
  • Reference Condition:
OMP:0000041

increased cell size

ECO:0000176

mutant visible phenotype analysis

Mutant: table 2.

  • increase biofilm formation
  • increase biofilm mass
  • increase surface coverage
  • increase mean thickness


PMID:16597943 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: BssR
  • Genotype of Experimental Strain : BssR(del)
  • Reference Condition:
OMP:0000045

increased motility

ECO:0000176

mutant visible phenotype analysis

Deletion mutation led to an increase in motility, relative to the wild type in LB medium, fig 3A. Except when glucose was added where motility was inhibited.


PMID:17511876 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: trpE
  • Genotype of Experimental Strain : trpE(del)
  • Reference Condition:
OMP:0000045

increased motility

ECO:0000094

biological assay data

Deletion mutation increase motility compared to wild-type strain, figure 6.


PMID:17511876 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: BW25113
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tnaC
  • Genotype of Experimental Strain : tnaC(del)
  • Reference Condition:
OMP:0000045

Increased motility

ECO:0000094

biological assay data

Deletion mutation increase motility compared to wild-type strain, figure 6.


PMID:19168658 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: sdiA
  • Genotype of Experimental Strain : sdiA1E11
  • Reference Condition:
OMP:0000176

biofilm phenotype

ECO:0000082

PCR experiment

biofilm formation is reduced from wild type due to increased indole concentration, 2A 2B.


PMID:17040104 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1157
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB
  • Genotype of Experimental Strain : uvrB5
  • Reference Condition:

OMP:0000275

decreased resistance to

ECO:0000094

Biological Assay Data

truncation mutation was more sensitive to lower mitomycin C concentrations than complete null mutation, uvrB301(de), due to proteins binding competition, figure 2.


PMID:17040104 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: 83333
  • Substrain: AB1157
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB
  • Genotype of Experimental Strain : uvrB301(del)
  • Reference Condition:

OMP:0000275

decreased resistance to

ECO: 0000094

Biological assay Data

Deletion mutants are more sensitive to DNA damaging agent Mitomycin C, figure 1 & 2.


PMID:17040104 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1157
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA
  • Genotype of Experimental Strain : uvrA(del)
  • Reference Condition:

OMP:0000275

decreased resistance to

ECO:0000094

Biological Data Assay

Deletion mutants are more sensitive to DNA damaging agent Mitomycin C, fig 1 & 2.


PMID:17040104 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1157
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC
  • Genotype of Experimental Strain : uvrC(del)
  • Reference Condition:

OMP:0000275

decreased resistance to

ECO:0000094

Biological Data Assay

Deletion mutants are more sensitive to DNA damaging agent Mitomycin C, figure 1 & 2.


PMID:17040104 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA uvrC
  • Genotype of Experimental Strain : uvrA::Tn10 uvrC34
  • Reference Condition:

OMP:0000275

decreased resistance to antibiotics

ECO:0000094

Biological Data Assay

Double mutation increased sensitivity to mitomycin C but at a slower rate than single deletions, figure 1.


PMID:17040104 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1157
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: recA
  • Genotype of Experimental Strain : recA142
  • Reference Condition:

OMP:0000275

decreased resistance to

ECO:0000094

Biological Data Assay

mutants are more sensitive to DNA damaging agent Mitomycin C, fig 2.


PMID:17040104 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA uvrC
  • Genotype of Experimental Strain : uvrA::Tn10 uvrC34
  • Reference Condition:

OMP:0000275

decreased resistance to

ECO:0000004

cell fractionation data

Double mutation was able to recover high molecular weight DNA, though at a much slower rate than wild type. See figure 4


PMID:17040104 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1157
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrB
  • Genotype of Experimental Strain : uvrB5
  • Reference Condition:

OMP:0000275

decreased resistance to

ECO:0000004

cell fractionation data

truncation mutation was more sensitive to mitomycin C treatments resulting in increasing amounts of DNA strand breaks. See figure 4


PMID:16970815 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA
  • Genotype of Experimental Strain : uvrA(del)
  • Reference Condition:

OMP:0000270

absence of growth

ECO:0000094

biological assay data

Deletion mutation causes hypersensitive to UV when irradiated and incubated in non-photoreactivating conditions, figure 2.


PMID:16970815 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrC
  • Genotype of Experimental Strain : uvrC(del)
  • Reference Condition:

OMP:0000270

absence of growth

ECO:0000094

biological assay data

Deletion mutation causes hypersensitive to UV when irradiated and incubated in non-photoreactivating conditions, fig 2.


PMID:17630776 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrAB
  • Genotype of Experimental Strain : uvrAB K45A
  • Reference Condition:

OMP:0000298

enzyme activity phenotype

ECO:0000049

reporter gene assay

ATP hydrolysis of uvrB by ATPase is inhibited (but not of uvrA in the complex). Table 1.


PMID:16829526 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uvrA
  • Genotype of Experimental Strain : ZnG uvrA
  • Reference Condition:

OMP:0000303

decreased substrate binding

ECO:0000164

electrophysiology assay data

Mutant shows decreased binding affinity to damaged DNA, table 1.


PMID:6998971 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: malE
  • Genotype of Experimental Strain : malE(del)
  • Reference Condition:

OMP:0000284

loss of utilization of carbon-containing compound

ECO:0000033

traceable author statement

Thio(5)maltose increase resistance for selection for mutant maltose transport system.


PMID:6998971 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: malF
  • Genotype of Experimental Strain : malF(del)
  • Reference Condition:

OMP:0000284

loss of utilization of carbon-containing compound

ECO:0000033

traceable author statement

Thio(5)maltose increase resistance for selection for mutant maltose transport system.


PMID:6998971 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: malG
  • Genotype of Experimental Strain : malG(del)
  • Reference Condition:

OMP:0000284

loss of utilization of carbon-containing compound

ECO:0000033

traceable author statement

Thio(5)maltose increase resistance for selection for mutant maltose transport system.


PMID:6998971 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: malK
  • Genotype of Experimental Strain : malK(del)
  • Reference Condition:

OMP:0000284

loss of utilization of carbon-containing compound

ECO:0000033

traceable author statement

Thio(5)maltose resistance.


PMID:6998971 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: malT
  • Genotype of Experimental Strain : malT(del)
  • Reference Condition:

OMP:0000284

loss of utilization of carbon-containing compound

ECO:0000033

traceable author statement

Thio(5)maltose resistance.


PMID:6266910 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: bglY
  • Genotype of Experimental Strain : bglY202
  • Reference Condition:

OMP:0000266

utilizes carbon-containing compound

ECO:0000182

in vitro culture assay data

Utilization of arbutin (a Beta-glucoside) as a carbon source, table 3.


PMID:6266910 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: blgY
  • Genotype of Experimental Strain : bglY203
  • Reference Condition:

OMP:0000266

utilizes carbon-containing

ECO:0000182

in vitro culture assay data

able to utilize arbutin and salicin as a carbon source, table 3. Mutations also utilizing similar carbon sources are: bglY204, bglY205, bglY206, bglY207


PMID:6450313 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: CA8445
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: cya crp
  • Genotype of Experimental Strain : cya (del) crp (del)
  • Reference Condition:
[[Category:OMP:0006057_!_decreased_resistance_to_aminoglycoside|OMP:0006057]]

decreased resistance to aminoglycoside

ECO:0000178

in vivo assay data

sensitivity to streptozotocin


PMID:6450313 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: L176
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: cyaA
  • Genotype of Experimental Strain : cyaA in strain L176
  • Reference Condition:
OMP:000605

decreased resistance to aminoglycoside

ECO:0000178

in vivo assay data

sensitivity to streptozotocin


PMID:6450313 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: LR2-163, LR-12, LR-29
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nagE
  • Genotype of Experimental Strain : nagE in strain LR2-163, LR-12, LR-29
  • Reference Condition:
[[Category:OMP:0006057_!_decreased_resistance_to_aminoglycoside|OMP:0006057]]

decreased resistance to aminoglycoside

ECO:0000178

in vivo assay data

Resistance to Streptozotocin


PMID:6450313 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: IR-101
  • Genotype of Reference Strain: manA
  • Genotype of Experimental Strain : manA -
  • Reference Condition:
[[Category:OMP:0006057_!_decreased_resistance_to_aminoglycoside|OMP:0006057]]

deceased resistance to aminoglycoside

ECO:0000178

in vivo assay data

sensitive to Streptozotocin


PMID:6450313 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pfkA
  • Genotype of Experimental Strain : pfkA
  • Reference Condition:
OMP:0006058

increased resistance to aminoglycoside

ECO:0000182

increased resistance to antibiotics

Resistant to streptozotocin


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5278
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nar-215
  • Genotype of Experimental Strain : nar-215::Tn10
  • Reference Condition:

OMP:0000298

enzyme activity phenotype

ECO:0000184

enzyme inhibition experiment data

mutant is narL - and has reduced Nitrate Reductase Activity


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5278
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nar-215
  • Genotype of Experimental Strain : nar-215::Tn10
  • Reference Condition:

OMP:0000298

enzyme activity phenotype

ECO:0000184

enzyme inhibition experiment data

mutant is narL- and has decreased formate activity


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5266
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nar-203
  • Genotype of Experimental Strain : nar-203::Tn10
  • Reference Condition:

OMP:0000298

enzyme activity phenotype

ECO:0000039

protein assay data

Mutant is NarK - and has an Incrase in nitrase reductase activity


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5266
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nar203
  • Genotype of Experimental Strain : nar-203::Tn10
  • Reference Condition:
OMP:0000269

protein activity phenotype

ECO:0000039

protein assay data

Mutant is NarK - and has Reduced Formate activity


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5267
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nar-204
  • Genotype of Experimental Strain : nar-204::Tn10
  • Reference Condition:
OMP:0000269

protein activity phenotype

ECO:0000039

protein assay data

Mutant is NarI - and has reduced nitrate reductase activity


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5267
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nar-204
  • Genotype of Experimental Strain : nar-204::Tn10
  • Reference Condition:
ECO:0000039

protein assay data

OMP:0000269

protein activity phenotype

Mutant is NarI - and has reduced Formate activity


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5263
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nar-200
  • Genotype of Experimental Strain : nar-200::Tn10
  • Reference Condition:
OMP:0000269

protein activity phenotype

ECO:0000039

protein assay data

mutant is NarH - and there is reduced nitrate reductase activity


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5263
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nar-200
  • Genotype of Experimental Strain : nar-200::Tn10
  • Reference Condition:
OMP:0000269

protein activity phenotype

ECO:0000039

protein assay data

Mutant is NarH - and there is reduced formate activity.


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5265
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nar-202
  • Genotype of Experimental Strain : nar-202::Tn10
  • Reference Condition:
OMP:0000269

protein activity phenotype

ECO:0000039

protein assay data

mutant is narG - and has reduced Nitrate reductase activity (roughly 1% of wildtype activity).


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5265
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nar-202
  • Genotype of Experimental Strain : nar-202::Tn10
  • Reference Condition:
OMP:0000269

protein activity phenotype

ECO:0000039

protein assay data

Mutant is narG- and has Reduced Formate activity


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: fnr
  • Genotype of Experimental Strain : fnr-
  • Reference Condition:

OMP:0000270

absence of growth

ECO:0000094

biological assay data

Mutants were sensitive to minimun 5 mM of chlorate.


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5230-5233
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: chlG
  • Genotype of Experimental Strain : chlG::Mu cts
  • Reference Condition:

OMP:0000270

absence of growth

ECO:0000094

biological assay data

chlorate resistance


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: chlG
  • Genotype of Experimental Strain : chlG::Mu cts
  • Reference Condition:

OMP:0000298

enzyme activity phenotype

ECO:0000039

protein assay data

decrease formate hydrogenlyase gas


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichai coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: chlG
  • Genotype of Experimental Strain : chlG::Mu cts
  • Reference Condition:
OMP:0000269

protein activity phenotype

ECO:0000039

protein assay data

reduced nitrate reductase activity


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: chlG
  • Genotype of Experimental Strain : chlG::Mu cts
  • Reference Condition:
OMP:0000255

plating phenotype

ECO:0000039

protein assay data

deficient in the expression of tiary amine oxide reductase activity, as estimated by their phenotypes on MacConkey TMAO medium.


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: clhE
  • Genotype of Experimental Strain : chlE::mu cts
  • Reference Condition:

OMP:0000270

absence of growth

ECO:0000094

biological assay data

Chlorate Resistance


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5201, RK5218, RK5223, RK5228, RK5240, RK5255
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: clhE
  • Genotype of Experimental Strain : chlE::mu cts
  • Reference Condition:
OMP:0000269

protein activity phenotype

ECO:0000039

protein assay data

Inhibition of nitrate reductase activity


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5201, RK5218, RK5223, RK5228, RK5240, RK5255
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: chlE
  • Genotype of Experimental Strain : chlE::mu cts
  • Reference Condition:
ECO:0000039

protein assay data

OMP:0000269

protein activity phenotype

Inhibition of formate hydrogenlyase (formate dehydrogenase plus hydrogenase) thus failing to produce gas.


PMID:7047497 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RK5201, RK5218, RK5223, RK5228, RK5240, RK5255
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: chlE
  • Genotype of Experimental Strain : chlE::mu cts
  • Reference Condition:
OMP:0000255

plating phenotype

ECO:0000039

protein assay data

Deficient in Tiary amine oxide reductase activity in anaerobic growth on MacConkey TMAO medium.


PMID:827549 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nupC nupG
  • Genotype of Experimental Strain : nupC - nupG -
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000094

biological assay data

  • Fluorouracil resistance


PMID:827549 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SO736
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: gru
  • Genotype of Experimental Strain : gru +
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000094

biological assay data

resistant to showdomycin


PMID:827549 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nupC nupG
  • Genotype of Experimental Strain : nupC - nupG -
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000094

biological assay data

  • Fluoruridine resistance


PMID:827549 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nupC nupG
  • Genotype of Experimental Strain : nupC - nupG -
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000094

biological assay data

  • Fluorodeoxycytidine resistance


PMID:7028032 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RIB185-1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: neg
  • Genotype of Experimental Strain : neg40
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Negamycin resistance


PMID:4923064 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1325
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: purB
  • Genotype of Experimental Strain : purB +
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Nalidixic acid resistance, figure 1


PMID:4923064 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AN2547A
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: purF
  • Genotype of Experimental Strain : purF +
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistance to Nalidixic acid, figure 1


PMID:4923064 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: ES4
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: purA
  • Genotype of Experimental Strain : purA +
  • Reference Condition:

OMP:0000275

decreased resistance to antimicrobial compound

Sensitivity to Nalidixic acid, figure 1


PMID:4923064 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: B96
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: purH
  • Genotype of Experimental Strain : purH
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistance to Nalidixic acid


PMID:372756 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: LE2-7 and LE5-1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplO
  • Genotype of Experimental Strain : rplO
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistance to Lincomycin


PMID:372756 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: LE2-10
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rpsG
  • Genotype of Experimental Strain : rpsG in strain LE2-10
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to lincomycin


PMID:372756 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: LE2-12
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplN
  • Genotype of Experimental Strain : rplN
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistance to Lincomycin


PMID:7050084 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: TS14-13-10
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rpsS
  • Genotype of Experimental Strain : rpsS
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Three step tiamulin resistance, table 1 and 2


PMID:7050084 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: TS15-23
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplD
  • Genotype of Experimental Strain : rplD
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Two step Tiamulin resistant, table 1 and 2


PMID:7050084 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: TS10-21
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplC
  • Genotype of Experimental Strain : rplC
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

rplC(L3) two step tiamulin resistant in strain 1 and 2


PMID:4589347 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: N281, N289, N21, N54, N486
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplV
  • Genotype of Experimental Strain : rplV
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000033

traceable author statement

altered protein 50-13(=L22) makes mutant Resistance to erythromycin, table 4


PMID:4589347 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: N282
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplD
  • Genotype of Experimental Strain : rplD
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000033

traceable author statement

altered protein 50-13(=L22) makes mutant Resistance to erythromycin, table 4


PMID:6757665 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: PB61
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rpoB ridB
  • Genotype of Experimental Strain : rpoB361 ridB1
  • Reference Condition: Rich medium and between 30 and 37C
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Mutant is dependent on rifampicin. with the condition its grown below 42C in rich medium. Table 3 and figure 1


PMID:1098662 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplE
  • Genotype of Experimental Strain : rplE
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Thiopeptin-resistant mutants. Obtained from E. coli Q 13 by treatment with N-methyl-N'-nitro-N-nitrosoguanidine.


PMID:4365100 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplE
  • Genotype of Experimental Strain : rplE
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Thiopeptin-resistant mutants. Obtained from E. coli Q 13 by treatment with N-methyl-N'-nitro-N-nitrosoguanidine.


PMID:342908 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: GE20-8
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplF
  • Genotype of Experimental Strain : rplF8
  • Reference Condition: Rich medium (TGYE)
  • Experimental Condition: Rich medium (TGYE)
OMP:0006058

increased resistance to aminoglycoside

ECO:0000182

in vitro culture assay data

Resistant to gentamicin (antibiotic) in rich medium (TGYE). table 4


PMID:342908 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: GS50-15
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplF
  • Genotype of Experimental Strain : rplF15
  • Reference Condition: Rich medium
  • Experimental Condition: Rich medium
OMP:0006058

increased resistance to aminoglycoside

ECO:0000182

in vitro culture assay data

gentamycin resistant, table 4


PMID:342908 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: GE20-10
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplF
  • Genotype of Experimental Strain : rplF10
  • Reference Condition: Rich medium
  • Experimental Condition: Rich medium
OMP:0006058

increased resistance to aminoglycoside

ECO:0000182

in vitro culture assay data

gentamycin resistant, table 4


PMID:342908 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: GE20-6
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rpsS
  • Genotype of Experimental Strain : rpsS6
  • Reference Condition: Rich medium
  • Experimental Condition: Rich Medium
OMP:0000276

increased resistance to aminoglycoside

ECO:0000182

in vitro culture assay data

Resistance to gentamicin, table 4


PMID:4387741 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: KY5102
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: stv
  • Genotype of Experimental Strain : stv-72
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to Streptovaricin, figure 1


PMID:1648558 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JHC1113
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: marA
  • Genotype of Experimental Strain : marA1
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to Menadione, table 2


PMID:1648558 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: cxfB
  • Genotype of Experimental Strain : cfxB1
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

provided increased resistance to ampicillin and tetracycline and constitutively over-expressed the micF RNA


PMID:1648558 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: soxQ
  • Genotype of Experimental Strain : soxQ1
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

expresses multiple antibiotic resistance (elevated resistance to redox agents- menadione- and antibiotics- chloramphenicol and nalidixic acid) and diminished rate of synthesis of OmpF. also showed increased resistance to ampicillin and tetracycline Constitutively over-expressed the micF RNA


PMID:1715857 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: HH84
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: manA
  • Genotype of Experimental Strain : manA(del)
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to ampicillin


PMID:1715857 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: HH84
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: manA
  • Genotype of Experimental Strain : manA(del)
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to Tetracycline


PMID:1715857 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: HH84
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: manA
  • Genotype of Experimental Strain : manA(del)
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to chloramphenicol


PMID:6243629 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: TMM1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mrdA
  • Genotype of Experimental Strain : mrdA1
  • Reference Condition: 30C
  • Experimental Condition: 42C
OMP:0000276

increased resistance to antibiotics

in vitro culture assay data

ECO:0000182

Resistance to mecillinams, strains TMM2, TMM3, TMM45 also have same phenotype.


PMID:6243629 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: TMM1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mrdA
  • Genotype of Experimental Strain : mrdA1
  • Reference Condition: 30C
  • Experimental Condition: 42C
OMP:0000073

cell shape phenotype

ECO:0000176

mutant visible phenotype analysis

Spherical shaped cells, Strains TMM2, TMM3,TMM5 have same phenotype


PMID:6243629 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: TMM4
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mrdB
  • Genotype of Experimental Strain : mrdB4
  • Reference Condition: 30C
  • Experimental Condition: 42C
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

MEcillinam resistance, Strain TMM6 also have same phenotype.


PMID:6243629 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: TMM4
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mrdB
  • Genotype of Experimental Strain : mrdB4
  • Reference Condition:
OMP:0000073

cell shape phenotype

ECO:0000176

mutant visible phenotype analysis

Spherical shaped cells, strain TMM6 also had the same phenotype.


PMID:2822655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AT1325-678
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mreB
  • Genotype of Experimental Strain : mre-129
  • Reference Condition: 30C
  • Experimental Condition: 42C
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Mecillinam resistance at 42C, table 2


PMID:2822655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AT1325-678
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mreC
  • Genotype of Experimental Strain : mre-129
  • Reference Condition: 30C
  • Experimental Condition: 42C
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Mecillinam resistance at 42C, table 2


PMID:2822655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AT1325-678
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mreD
  • Genotype of Experimental Strain : mre-129
  • Reference Condition: 30C
  • Experimental Condition: 42C
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Mecillinam resistance at 42C, table 2


PMID:2822655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AT1325-678
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mreB
  • Genotype of Experimental Strain : mre-678
  • Reference Condition:
OMP:0000073

cell shape phenotype

ECO:0000176

mutant visible phenotype analysis

spherical shaped


PMID:2822655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AT1325-678
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mreD
  • Genotype of Experimental Strain : mre-678
  • Reference Condition:
OMP:0000073

cell shape phenotype

ECO:0000176

mutant visible phenotype analysis

spherical shaped, table 2


PMID:2822655 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AT1325-678
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mreC
  • Genotype of Experimental Strain : mre-678
  • Reference Condition:
OMP:0000073

cell shape phenotype

ECO:0000176

mutant visible phenotype analysis

Sphere shaped, table 2


PMID:1625583 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: S339
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nov
  • Genotype of Experimental Strain : nov
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistance to Novobiocin, table 2


PMID:6387400 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SSJ-1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nfnB
  • Genotype of Experimental Strain : nfnB
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to Nitrofurantoin. Strains: SSJ-1 through SSJ-5 express identical phenotype.


PMID:6387400 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SSJ-1
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nfnA
  • Genotype of Experimental Strain : nfnA
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to Nitrofurantoin. Strains: SSJ-1 through SSJ-5 express identical phenotype.


PMID:3906038 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB1157
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: nalD+
  • Genotype of Experimental Strain : nalD mutation in AB1157-81
  • Reference Condition: 30C
  • Experimental Condition: 37C
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Mutant is resistant to Nalidixic acid (NAL) at 37C and sensitive at 30C


PMID:4594014 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: GIA58
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: qmeC
  • Genotype of Experimental Strain : qmeC
  • Reference Condition: 37C

OMP:0000275

decreased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Sensitivity to Penicillin G, table 3


PMID:4594014 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: GIA63
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: qmeD
  • Genotype of Experimental Strain : qmeD
  • Reference Condition: 37C

OMP:0000275

decreased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Increased sensitivity to Penicillin G


PMID:4594014 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: GIA65
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: qmeE
  • Genotype of Experimental Strain : qmeE
  • Reference Condition: 37C

OMP:0000275

decreased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Increased sensitivity to Penicillin G, table 3


PMID:4594014 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: GIA64
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: qmeF
  • Genotype of Experimental Strain : qmeF
  • Reference Condition: 37C

OMP:0000275

decreased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Increased sensitivity to Penicillin G


PMID:4555418 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: glpT
  • Genotype of Experimental Strain : glpT -
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Phosphonomycin resistant


PMID:4555418 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: uhp
  • Genotype of Experimental Strain : uhp -
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Phosphonomycin resistant


PMID:4555418 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ptsI
  • Genotype of Experimental Strain : ptsI
  • Reference Condition:
  • Experimental Condition: Slow growth at 42C
OMP:0000276

increased resistance to antimicrobial compound

Phosphonomycin resistant


PMID:4555418 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ptsH
  • Genotype of Experimental Strain : ptsH
  • Reference Condition: Slow growth at 42C
OMP:0000276

increased resistance to antimicrobial compound

Phosphonomycin resistant


PMID:1925019 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mrbA
  • Genotype of Experimental Strain : mrbA4
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

camphor resistance


PMID:1925019 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mrbA
  • Genotype of Experimental Strain : mrbA15
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

Resistant to camphor


PMID:1925019 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: mbrC
  • Genotype of Experimental Strain : mbrC11
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

Camphor Resistance


PMID:1925019 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: mbrD
  • Genotype of Experimental Strain : mbrD3
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

Camphor Resistance, Several other similar phenotype mutants are described


PMID:1925019 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: mbrD
  • Genotype of Experimental Strain : mbrD7
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

Resistance to camphor, other mutants with similar phenotypes are described


PMID:2176633 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mrbA
  • Genotype of Experimental Strain : mrbA4
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

camphor resistance


PMID:2176633 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mrbA
  • Genotype of Experimental Strain : mrbA15
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to camphor


PMID:2176633 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mbrC
  • Genotype of Experimental Strain : mbrC11
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Camphor Resistance


PMID:2176633 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: mbrD
  • Genotype of Experimental Strain : mbrD3
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Camphor Resistance, Several other similar phenotype mutants are described


PMID:2176633 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: mbrD
  • Genotype of Experimental Strain : mbrD7
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistance to camphor, other mutants with similar phenotypes are described


PMID:4879569 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: mutT
  • Genotype of Experimental Strain : mutT1
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Streptomycin resistance (table 1). Other strains with same phenotype are described.


PMID:1991710 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: F19
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: recA
  • Genotype of Experimental Strain : recA
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistance to Metronidazole, figure 1


PMID:1991710 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P460
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: ompA
  • Genotype of Experimental Strain : ompA
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to bacteriocin Colicin K, table 3


PMID:1991710 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P1636
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: ompA
  • Genotype of Experimental Strain : ompA
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to bacteriocin Colicin L, table 3


PMID:1991710 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P460
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: ompA
  • Genotype of Experimental Strain : ompA
  • Reference Condition:

OMP:0000038

bacteriophage-host interaction phenotype

ECO:0000182

in vitro culture assay data

Resistant to bacteriophage K3


PMID:6819426 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: A1
  • NCBI Taxon ID: 8333
  • Genotype of Reference Strain: ompA
  • Genotype of Experimental Strain : ompA1
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to novobicin


PMID:783128 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P460
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ompA
  • Genotype of Experimental Strain : 'ompA
  • Reference Condition:

OMP:0000038

bacteriophage-host interaction phenotype

ECO:0000182

in vitro culture assay data

Resistance to Bacteriocin JF246, table 3


PMID:789358 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JF557
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ompF
  • Genotype of Experimental Strain : ompF
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistance to Chloramphenicol, table 5


PMID:789358 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JF557
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ompF
  • Genotype of Experimental Strain : ompF
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistance to Tetracycline, table 5


PMID:789358 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JF557
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ompF
  • Genotype of Experimental Strain : ompF
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistance to oxytetracycline, table 5


PMID:789358 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JF557
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ompF
  • Genotype of Experimental Strain : ompF
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistance to polymyxin, table 5


PMID:346560 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: 834
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ompR
  • Genotype of Experimental Strain : ompR
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

chlormaphenicol resistant


PMID:4583226 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: FS141
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: mac
  • Genotype of Experimental Strain : mac-1 eryA7
  • Reference Condition:

OMP:0000449

erythromycin dependent growth

Figure 5


PMID:4940111 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: IR-101
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: manA
  • Genotype of Experimental Strain : manA -
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

sensitive to Streptozotocin


PMID:7679383 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: cfxB
  • Genotype of Experimental Strain : cfxB1
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

provided increased resistance to ampicillin and tetracycline and constitutively over-expressed the micF RNA


PMID:7679383 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: soxQ
  • Genotype of Experimental Strain : soxQ1
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

expresses multiple antibiotic resistance (elevated resistance to redox agents- menadione- and antibiotics- chloramphenicol and nalidixic acid) and diminished rate of synthesis of OmpF


PMID:4945191 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: D21
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ptsI
  • Genotype of Experimental Strain : ptsI in mutant strain D21e18
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Ampicillin resistance in LA plates containing ampicillin.


PMID:4945191 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: D21
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: galU
  • Genotype of Experimental Strain : galU in mutant strain D21e8
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Ampicillin resistance in LA plates containing ampicillin.


PMID:4945191 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: D21
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: lpsA
  • Genotype of Experimental Strain : lpsA in mutant strain D21e7
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Ampicillin resistance in LA plates containing ampicillin.


PMID:4945191 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: D21
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: lpsB
  • Genotype of Experimental Strain : lpsB in mutant strain D21e19
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Ampicillin resistance in LA plates containing ampicillin.


PMID:2981814 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: oppE
  • Genotype of Experimental Strain : oppE -
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

tetracycline resistant


PMID:6392473 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: Strain IB3
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pabA
  • Genotype of Experimental Strain : pabA
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to Sulfonamide


PMID:6392473 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: Strain IB3
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pabB
  • Genotype of Experimental Strain : pabB
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to Sulfonamide


PMID:6392473 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: Strain IB3
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pabC
  • Genotype of Experimental Strain : pabC
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to Sulfonamide


PMID:6392473 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: Strain IB3
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pabD
  • Genotype of Experimental Strain : pabD
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000182

in vitro culture assay data

Resistant to Sulfonamide


PMID:4939769 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: WG497
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pdx
  • Genotype of Experimental Strain : pdx
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Resistant to Isoniazid


PMID:4344919 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pgi
  • Genotype of Experimental Strain : pgi
  • Reference Condition:
OMP:0006058

increased resistance to aminoglycoside

ECO:0000182

in vitro culture assay data

fosfomycin + fructose-6-phosphate resistance


PMID:4919964 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: UR13
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pit
  • Genotype of Experimental Strain : pit
  • Reference Condition:
OMP:0000273

auxotroph

ECO:0000182

in vitro culture assay data

sn-glycerol-3-phosphate auxotroph


PMID:104974 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: S17
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pldA
  • Genotype of Experimental Strain : pldA
  • Reference Condition: no EDTA
  • Experimental Condition: Presence of EDTA
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Mutant deficient in both detergent-resistant phospholipase A and detergent-sensitive phospholipase A are resistant to Actinomycin D in the presence of EDTA.


PMID:104974 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: NL101
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pldA
  • Genotype of Experimental Strain : pldA
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Resistant to actinomycin D in the presence of EDTA


PMID:1656859 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SC9252
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pmrA
  • Genotype of Experimental Strain : pmrA
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Resistant to polymyxin, table 1


PMID:1656859 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SC9252
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pmrA
  • Genotype of Experimental Strain : pmrA
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Resistant to Gentamicin, table 1


PMID:780339 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: pncA
  • Genotype of Experimental Strain : pncA
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000034

non-traceable author statement

Resistant to 6-amino-nicotinamide


PMID:391567 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K12
  • Substrain: JRG997
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ampC +
  • Genotype of Experimental Strain : ampC -
  • Reference Condition: anaerobic and aerobic growth medium
  • Experimental Condition: anaerobic and aerobic growth medium
OMP:0000267

increased gene expression

ECO:0000046

protein expression level analysis


PMID:391567 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ampA
  • Genotype of Experimental Strain : ampA1
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000033

traceable author statement

ampicillin resistance. Traceable here [2] [3]


PMID:161156 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: L191
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ptsHI
  • Genotype of Experimental Strain : ptsHI
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

ECO:0000178

in vivo assay data

Double mutant is resistant to streptozotocin


PMID:6355059 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: RM2
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: putAP
  • Genotype of Experimental Strain : putAP(del)101
  • Reference Condition:
OMP:0000273

auxotroph

ECO:0000178

in vivo assay data

Proline Auxotroph.


PMID:6355059 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: WG170 and WG174
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: proP
  • Genotype of Experimental Strain : proP220::Tn5
  • Reference Condition:
OMP:0000273

auxotroph

ECO:0000178

in vivo assay data

Proline Auxotroph


PMID:201607 a mutation or genetic difference within a strain
  • Taxon: Eshcerichia coli
  • Strain: K-12
  • Substrain: HL18
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rodY
  • Genotype of Experimental Strain : rodY -
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

Resistance to mecillinam


PMID:201607 a mutation or genetic difference within a strain
  • Taxon: Eshcerichia coli
  • Strain: K-12
  • Substrain: HL18
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rodY
  • Genotype of Experimental Strain : rodY -
  • Reference Condition:
OMP:0000075

coccus

Round morphology


PMID:201607 a mutation or genetic difference within a strain
  • Taxon: Eshcerichia coli
  • Strain: K-12
  • Substrain: H3, HL29, HL103
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rodX
  • Genotype of Experimental Strain : rodX -
  • Reference Condition:
OMP:0000075

coccus

Round morphology


PMID:201607 a mutation or genetic difference within a strain
  • Taxon: Eshcerichia coli
  • Strain: K-12
  • Substrain: H3, HL29, HL103
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rodX
  • Genotype of Experimental Strain : rodX -
  • Reference Condition:
OMP:0000276

increased resistance to antibiotics

Resistance to mecillinam


PMID:4879326 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: K1100R3
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rpoB
  • Genotype of Experimental Strain : rpoB
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Rfampin resistance


PMID:3050121 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rpoB
  • Genotype of Experimental Strain : rpoB 3445
  • Reference Condition: 37C
  • Experimental Condition: 37C
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000178

in vivo assay data

Resistance to rifampicin at different concentrations in vivo


PMID:3050121 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rpoB
  • Genotype of Experimental Strain : rpoB 3445
  • Reference Condition: 37C
  • Experimental Condition: 37C
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000178

in vivo assay data

Resistance to rifampicin at different concentrations In vitro.


PMID:4571524 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: KY1343
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rpoB
  • Genotype of Experimental Strain : rpoB
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000178

in vivo assay data

Resistance to Streptolydigin. in vivo.


PMID:4571524 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: KY1343
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rpoB
  • Genotype of Experimental Strain : rpoB
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000182

in vitro culture assay data

Resistance to Streptolydigin. In vitro.


PMID:4897821 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: PA6075
  • Genotype of Reference Strain: rpoB
  • Genotype of Experimental Strain : rpoB
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistant to Streptolydigin, table 1


PMID:4611426 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB312
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rpsB
  • Genotype of Experimental Strain : rpsB
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

ECO:0000033

traceable author statement

Kasugamycin Resistance


PMID:4604727 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: Strain K12-S & Others
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: neaA
  • Genotype of Experimental Strain : neaA
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistant to Neamine. Strain K12-S as well as other strains are described in the first table.


PMID:6760806 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: B1466
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ompF
  • Genotype of Experimental Strain : ompF1466
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistance to beta lactam ampicillin


PMID:6760806 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: B1466
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ompF
  • Genotype of Experimental Strain : ompF1466
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistance to beta lactam Cefoxitin


PMID:6760806 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: B1436
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ompB
  • Genotype of Experimental Strain : ompB1422
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistance to beta lactam Cefoxitin


PMID:6760806 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: B1436
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ompB
  • Genotype of Experimental Strain : ompB1422
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistance to beta lactam ampicillin


PMID:6344786 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: B1389
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: crp
  • Genotype of Experimental Strain : crp in strain B1558
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistance to Beta Lactams


PMID:2826407 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: GC2700
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: crp
  • Genotype of Experimental Strain : crp in mutant strain B1558
  • Reference Condition:
OMP:0000075

coccus

Mutatins causes spherical morphology. Wild Type is rod shaped.


PMID:6802799 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: CU1008
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ecfB
  • Genotype of Experimental Strain : ecfB in strains KEC1 - KEC20
  • Reference Condition:

OMP:0000266

utilizes carbon-containing compound

Carbon utilization of L-Serine. See table 1


PMID:6802799 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: W4977
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ecfB
  • Genotype of Experimental Strain : ecfB in strains KEC21 - KEC30
  • Reference Condition:

OMP:0000266

utilizes carbon-containing compound

Carbon utilization of L-Serine. See table 1


PMID:6802799 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: CU1008
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ssd
  • Genotype of Experimental Strain : ssd' in mutant strain KEC3
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistance to Kanamycin


PMID:6802799 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: CU1008
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ssd
  • Genotype of Experimental Strain : ssd' in mutant strain KEC3
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistance to Neomycin


PMID:6337124 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: B
  • Substrain: TA44
  • NCBI Taxon ID: 37762
  • Genotype of Reference Strain: rpsI+
  • Genotype of Experimental Strain : rpsI2 mutation in MV101
  • Reference Condition:
OMP:0006058

increased resistance to aminoglycoside

ECO:0000033

traceable author statement

Due to alterations in the rpsI gene there was an increase in kasugamycin resistance. See page 712 of for full details and Fig 1 for two-dimensional gel electropherogram of MV101 strain.


PMID:6337124 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: B
  • Substrain: TA44
  • NCBI Taxon ID: 37762
  • Genotype of Reference Strain: rpsI+
  • Genotype of Experimental Strain : rpsI2 mutation in MV101
  • Reference Condition:
OMP:0006058

increased resistance to aminoglycoside

ECO:0000033

traceable author statement

Due to alterations in the rpsI gene kasugamycin dependence developed. See page 712 of for full details and Fig 1 for two-dimensional gel electropherogram of MV101 strain.


PMID:6337124 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: B
  • Substrain: TA44
  • NCBI Taxon ID: 37762
  • Genotype of Reference Strain: rpsI+
  • Genotype of Experimental Strain : rpsI2 mutation in MV101
  • Reference Condition:
OMP:0006058

increased resistance to aminoglycoside

ECO:0000181

in vitro assay data

Kasugamycin dependence due to rpsI mutation was verified by antibiotic deprivation. See Figure 3 for growth curve of antibiotic test. See figure 4 for rate of protein and nucleic acid synthesis.


PMID:8509326 a mutation or genetic difference within a strain
  • Taxon: Escerichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: emrB
  • Genotype of Experimental Strain : emrB in mutant strain CDM5
  • Reference Condition:
OMP:0006058

increased resistance to aminoglycoside compound

Resistant to Thiolactomycin in vivo. It is still sensitive in Vitro.


PMID:8509326 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Genotype of Reference Strain: nalB
  • Genotype of Experimental Strain : nalB4
  • Reference Condition:
OMP:0006058

increased resistance to aminoglycoside compound

Resistance to Thiolactomycin.


PMID:363690 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AT2538
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: envB
  • Genotype of Experimental Strain : envB(TS)
  • Reference Condition: 30C Rod shaped cells (wild type)
  • Experimental Condition: 42C Spherical shaped cells
OMP:0000075

coccus

Spherical shapes at 42C. Wildtype Rod at 30C


PMID:340907 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AT2472
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplV
  • Genotype of Experimental Strain : rplV09
  • Reference Condition: 20C
  • Experimental Condition: 32C is the permissive temperature
OMP:0000276

increased resistance to antimicrobial compound

Erythromycin resistance at the permissive temperatures above 32C


PMID:340907 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AT2472
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: rplD
  • Genotype of Experimental Strain : rplD20
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Erythromycin resistance at the permissive temperatures above 32C


PMID:4570603 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC12
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ksgA ksgB
  • Genotype of Experimental Strain : ksgA23 ksgB1
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Double mutant is Resistant to Kasugamycin at levels greater than 2,000 µg/ml. See table 5.


PMID:4570603 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC411
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ksgA
  • Genotype of Experimental Strain : ksgA19
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistant to Aminoglycoside Kasugamycin at concentrations at 1,000 µg/ml. Mutant strain: FS232, on table 5.


PMID:4570603 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC411
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ksgA
  • Genotype of Experimental Strain : ksgA19
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistant to Aminoglycoside Kasugamycin at concentrations at 2,000 µg/ml. Mutant strain: FS131, on table 5.


PMID:6257656 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC5029
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ksgD
  • Genotype of Experimental Strain : ksgD101:Tn5
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Increase resistane to Aminoglycoside Kasugamycin Antibiotic at consentrations up to 600 µg/ml. In strain: SDB1171


PMID:6257656 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC5029
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ksgB
  • Genotype of Experimental Strain : ksgB1
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Increase resistane to Aminoglycoside Kasugamycin Antibiotic at consentrations up to 600 µg/ml. In strain: SDB1170


PMID:6257656 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: JC5029
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ksgD ksgB
  • Genotype of Experimental Strain : ksgB1 ksgD101::Tn5
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Increase resistane to Aminoglycoside Kasugamycin Antibiotic at consentrations up to 600 µg/ml


PMID:1563353 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: GC2700
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: argS
  • Genotype of Experimental Strain : argS201 in strain GC3700
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistance to Mecillinam (A B Lactam). See table 2.


PMID:1563353 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: GC2700
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: argS
  • Genotype of Experimental Strain : alaS21 in strain GC3702
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistance to Mecillinam (A B Lactam). See Table 2


PMID:6264273 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain:
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: cysB
  • Genotype of Experimental Strain : cys2332
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

Resistant to antibiotic nalidixic acid.


PMID:6808961 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P674
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tsx+
  • Genotype of Experimental Strain : tsx-2 in strain KG16
  • Reference Condition:
OMP:0006049

increased resistance to bacteriocin

ECO:0000181

in vitro assay evidence

The tsx-2 class mutants were resistant toward the Colicin K.


PMID:6808961 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P674
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tsx+
  • Genotype of Experimental Strain : tsx-1 in GG24
  • Reference Condition:
OMP:0006049

increased resistance to bacteriocin

ECO:0000181

in vitro assay evidence

The tsx-1 class of mutants contained a slight resistances toward Colicin K.


PMID:6808961 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P674
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tsx+
  • Genotype of Experimental Strain : tsx-2 in strain KG16
  • Reference Condition:
[[Category:OMP:0006057_!_decreased_resistance_to_aminoglycoside|OMP:0006057]]

decreased resistance to aminoglycoside

ECO:000034

non-traceable author statement

The tsx-2 mutation caused increased sensitivity toward the antibiotic kanamycin.


PMID:6808961 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P674
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tsx+
  • Genotype of Experimental Strain : tsx-2 in strain KG16
  • Reference Condition:
OMP:0006044

decreased resistance to beta-lactam

000034

non-traceable author statement

The tsx-2 mutation caused increased sensitivity toward the antibiotics ampicillin and carbenicillin.


PMID:6808961 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P674
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tsx+
  • Genotype of Experimental Strain : tsx-2 in strain KG16
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

000034

non-traceable author statement

The tsx-2 mutation caused increased sensitivity toward the antibiotic chloramphenicol.


PMID:6808961 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P674
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tsx+
  • Genotype of Experimental Strain : tsx-2 in strain KG16
  • Reference Condition:
OMP:0000276

increased resistance to antimicrobial compound

000034

non-traceable author statement

The tsx-2 mutation caused increased sensitivity toward the antibiotic novobiocin.


PMID:6808961 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P674
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tsx+
  • Genotype of Experimental Strain : tsx-2 in strain KG16
  • Reference Condition:
OMP:0006040

decreased resistance to quinolone

ECO:000034

non-traceable author statement

The tsx-2 mutation caused increased sensitivity toward the antibiotic nalidixic acid.


PMID:6808961 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: P674
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tsx+
  • Genotype of Experimental Strain : tsx-2 in strain KG16
  • Reference Condition:
[[Category:OMP:0006057_!_decreased_resistance_to_aminoglycoside|OMP:0006057]]

decreased resistance to aminoglycoside

ECO:000034

non-traceable author statement

The tsx-2 mutation caused increased sensitivity toward the antibiotics neomycin.


PMID:10639134 a mutation or genetic difference within a strain
  • Taxon: Escherichia Coli
  • Strain: K-12
  • Substrain: W3110
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: copA
  • Genotype of Experimental Strain : copA(del) In strain LMG194
  • Reference Condition:

OMP:0000275

decreased resistance to antimicrobial compound

ECO:0000267

enzyme-linked immunoabsorbent assay evidence

Sensitivity to antimicrobial agent Copper Ion. See growth curve in figure 2.


PMID:10893421 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Genotype of Reference Strain: accA
  • Genotype of Experimental Strain : accA ++
  • Reference Condition:
OMP:0000267

increased gene expression

ECO:0000178

in vivo assay evidence

Increase Acetyle COA Carboxylase activity upon over expression. See table 1.


PMID:10893421 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Genotype of Reference Strain: accB
  • Genotype of Experimental Strain : accB ++
  • Reference Condition:
OMP:0000267

increased gene expression

ECO:0000178

in vivo assay evidence

Increase Acetyle COA Carboxylase activity upon over expression. See table 1.


PMID:10893421 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Genotype of Reference Strain: accC
  • Genotype of Experimental Strain : accC ++
  • Reference Condition:
OMP:0000267

increased gene expression

ECO:0000178

in vivo assay evidence

Increase Acetyle COA Carboxylase activity upon over expression. See table 1.


PMID:10893421 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Genotype of Reference Strain: accD
  • Genotype of Experimental Strain : accD ++
  • Reference Condition:
OMP:0000267

increased gene expression

ECO:0000178

in vivo assay evidence

Increase Acetyle COA Carboxylase activity upon over expression. See table 1.


PMID:8524852 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: 205096
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: gyrA+
  • Genotype of Experimental Strain : gyrAR; S83L
  • Reference Condition:
OMP:0006041

increased resistance to quinolones

0000178

in vivo assay evidence

The mutation the gyrAr caused increased resistance to various quinolones. chEBI:23765


PMID:8524852 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: 205096
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: ParC+
  • Genotype of Experimental Strain : ParCL80
  • Reference Condition:
OMP:0006041

increased resistance to quinolone

ECO:0000178

in vivo assay evidence

The S80L mutation conferred an increase in resistance toward norfloxacin by about 10 fold. See table 3 for full experimental results. chEBI:100246


PMID:8524852 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: 205096
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: parC+ gyrA+
  • Genotype of Experimental Strain : parCL80 gyrAr
  • Reference Condition:
OMP:0006041

increased resistance to quinolones

ECO:0000178

in vivo assay evidence

the double parC and gyrA mutations conferred resistance to various quinolones at a rate that was 6 times higher than the strain with a single gyrAr mutation. See figure 4 for full experimental results. chEBI:23765


PMID:8524852 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: 205096
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: gyrA+ parC+
  • Genotype of Experimental Strain : gyrAr parCK
  • Reference Condition:
OMP:0006041

increased resistance to quinolone

ECO:0000178

in vivo assay evidence

The mutation conferred resistance toward quinolones at about 10 fold higher level than the gyrAr mutation alone and twice than parCL80 mutation. See figure 4. chEBI:23765


PMID:11399091 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: SD104
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: gyrB
  • Genotype of Experimental Strain : gyrB-225 See figure 1
  • Reference Condition:
OMP:0000294

DNA supercoiling phenotype

ECO:0000267

enzyme-linked immunoabsorbent assay evidence

Decreased Supercoiling by 6 times. See table 1.


PMID:137233 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: W4977
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: aat
  • Genotype of Experimental Strain : aat-1
  • Reference Condition:
OMP:0000132

pleomorphic

ECO:0000176

mutant visible phenotype evidence

Abnormal Morphology appearing as clubs, spheres or ellipsoids.


PMID:137233 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: W4977
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: aat
  • Genotype of Experimental Strain : aat-1
  • Reference Condition: Aspartic Acid as Sole Nitrogen Source
  • Experimental Condition: Aspartic Acid as sole Nitrogen Source
OMP:0000282

increased growth rate

ECO:0000005

enzyme assay evidence

In the presence of Aspartic Acid as the sole nitrogen source, the mutants doubling time increase by twice.


PMID:14153532 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: z-15
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: Strain z-15
  • Genotype of Experimental Strain : Derivatives of Z-15
  • Reference Condition:

OMP:0000284

loss of utilization of carbon-containing compound

ECO:0000178

in vivo assay evidence

Abolished utilization of carbon source lactose in mutant strain. See Table 1.


PMID:6998961 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: AB2497
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: FtsQ+
  • Genotype of Experimental Strain : TOE-1 FtsQ-
  • Reference Condition: 30oC
  • Experimental Condition: 42oC
OMP:0000280

elongated cell length

ECO:0000178

in vivo assay evidence

The mutation caused the production of long filamentous cells. See figure 2.


PMID:4916925 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: Escherichia coli K-12
  • Substrain: AW518
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: tsr+
  • Genotype of Experimental Strain : tsr-1
  • Reference Condition: semisolid tryptone agar, 35C
  • Experimental Condition: semisolid tryptone agar, 35C
OMP:0007041

decreased positive chemotaxis

ECO:0000182

in vitro culture assay evidence


PMID:9791174 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K12
  • Substrain: 2K1056
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: fimH1
  • Genotype of Experimental Strain : fimH1::cam
  • Reference Condition: 24H, room temp
  • Experimental Condition: 24H, room temp
OMP:0007026

decreased biofilm formation

fig. 4C, LB


PMID:9791174 a mutation or genetic difference within a strain
  • Taxon: Escherichia coli
  • Strain: K12
  • Substrain: 2K1056
  • NCBI Taxon ID: 83333
  • Genotype of Reference Strain: fimH1::cam
  • Genotype of Experimental Strain : fimH1::cam
  • Reference Condition: 24H, room temp
  • Experimental Condition: 24H, room temp
OMP:0006100

abolished cell motility by swimming

fig. 4C, LB


References

See Help:References for how to manage references in OMPwiki.

  1. Nunoshiba, T et al. (1999) Role of iron and superoxide for generation of hydroxyl radical, oxidative DNA lesions, and mutagenesis in Escherichia coli. J. Biol. Chem. 274 34832-7 PubMed OMPwiki page
  2. Normark, S & Burman, LG (1977) Resistance of Escherichia coli to penicillins: fine-structure mapping and dominance of chromosomal beta-lactamase mutations. J. Bacteriol. 132 1-7 PubMed OMPwiki page
  3. Held, WA & Smith, OH (1970) Mechanism of 3-methylanthranilic acid derepression of the tryptophan operon in Escherichia coli. J. Bacteriol. 101 209-17 PubMed OMPwiki page