OMP ST:73113 ! Escherichia coli K-12 JW2871

Strain Summary

Strain Name	Escherichia coli K-12 JW2871
Synonyms	JW2871-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 gcvP754(del)::FRT-kan-FRT
Strain Reference	PMID:16738554 Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
edit table

Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:32682		OMP:0007074	increased growth factor requirement	Relative to: OMP_AN:27601 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Sodium Acetate anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:32954) Sodium Acetate anhydrous	chemical concentration= 0.6% normalized fitness= 3.42
OMP_AN:32683		OMP:0007071	increased organic carbon source utilization	Relative to: OMP_AN:27611 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Sodium Acetate anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:32954) Sodium Acetate anhydrous	chemical concentration= 0.6% normalized fitness= 3.42
OMP_AN:32684		OMP:0007173	decreased resistance to host defense peptides	Relative to: OMP_AN:27562 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cecropin B	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:16130488) Cecropin B	chemical concentration= 0.3 ug/ml normalized fitness= -3.92
OMP_AN:32685		OMP:0007074	increased growth factor requirement	Relative to: OMP_AN:27606 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= 3.71
OMP_AN:32686		OMP:0007071	increased organic carbon source utilization	Relative to: OMP_AN:27616 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= 3.71
OMP_AN:32687		OMP:0007074	increased growth factor requirement	Relative to: OMP_AN:27604 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Glycerol	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:17754) Glycerol	chemical concentration= 0.4% normalized fitness= 5.51
OMP_AN:32688		OMP:0007071	increased organic carbon source utilization	Relative to: OMP_AN:27614 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Glycerol	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:17754) Glycerol	chemical concentration= 0.4% normalized fitness= 5.51
OMP_AN:32689		OMP:0007074	increased growth factor requirement	Relative to: OMP_AN:27605 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Maltose monohydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23615261) D-(+) Maltose monohydrate	chemical concentration= 0.1% normalized fitness= 3.79
OMP_AN:32690		OMP:0007071	increased organic carbon source utilization	Relative to: OMP_AN:27615 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Maltose monohydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23615261) D-(+) Maltose monohydrate	chemical concentration= 0.1% normalized fitness= 3.79
OMP_AN:32691		OMP:0007074	increased growth factor requirement	Relative to: OMP_AN:27607 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Succinic acid	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:15741) Succinic acid	chemical concentration= 0.3% normalized fitness= 3.52
OMP_AN:32692		OMP:0007071	increased organic carbon source utilization	Relative to: OMP_AN:27617 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Succinic acid	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:15741) Succinic acid	chemical concentration= 0.3% normalized fitness= 3.52
OMP_AN:32693		OMP:0007250	increased resistance to a chemical	Relative to: OMP_AN:27568 Genotype differences: +lacZ4787(del)( +gcvP754(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:(±)-Verapamil hydrochloride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:53188) (±)-Verapamil hydrochloride	chemical concentration= 0.1 mM normalized fitness= 3.37
edit table

References

See Help:References for how to manage references in OMPwiki.