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OMP ST:1032 ! Escherichia coli K-12 JW3765

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A conflict has been detected between the version of this table in the wiki and the copy you are editing.

Rows in conflict with the working copy:

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

public

OMP_AN:34304

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27552

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Azidothymidine

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:10110) Azidothymidine

  • chemical concentration= 2.5 ng/ml
  • normalized fitness= -3.71

public

OMP_AN:34305

OMP:0006044

decreased resistance to beta-lactam

Relative to: OMP_AN:27535

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Cefsulodin sodium salt hydrate

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:31380) Cefsulodin sodium salt hydrate

  • chemical concentration= 18 ug/ml
  • normalized fitness= -3.26

public

OMP_AN:34306

OMP:0006057

decreased resistance to aminoglycoside

Relative to: OMP_AN:27528

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Streptomycin sulfate

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:32158) Streptomycin sulfate

  • chemical concentration= 0.05 ug/ml
  • normalized fitness= -3.42

public

OMP_AN:34307

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27588

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Triclosan/Irgasan

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:164200) Triclosan/Irgasan

  • chemical concentration= 0.05 ug/ml
  • normalized fitness= -4.53

public

OMP_AN:34308

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27569

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:EtOH

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:16236) EtOH

  • chemical concentration= 6 %
  • normalized fitness= -4.11

public

OMP_AN:34309

OMP:0007520

increased population growth in high osmolarity

Relative to: OMP_AN:27595

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:NaCl

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:26710) NaCl

  • chemical concentration= 600 mM
  • normalized fitness= 6.61

public

OMP_AN:34310

OMP:0007008

decreased population growth at acidic pH

Relative to: OMP_AN:27622

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:MES-HOMOPIPES

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES

  • chemical concentration= pH 4
  • normalized fitness= -4.68

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Working copy:

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Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

public

OMP_AN:944

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:881

Genotype differences:

+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rffA742(del) -IN(rrnD-rrnE)1

Condition differences:

no differences

  • temperature:33C
  • medium:swarming motility medium

ECO:0005803

motility assay evidence

PMID:17122336

public

OMP_AN:1136

OMP:0005324

altered cell motility by swimming

Relative to: OMP_AN:882

Genotype differences:

+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rffA742(del) -IN(rrnD-rrnE)1

Condition differences:

no differences

  • temperature:33C
  • medium:swimming motility medium

ECO:0005803

motility assay evidence

PMID:17122336

public

OMP_AN:34304

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27552

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Azidothymidine

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:10110) Azidothymidine

  • chemical concentration= 2.5 ng/ml
  • normalized fitness= -3.71

public

OMP_AN:34305

OMP:0006044

decreased resistance to beta-lactam

Relative to: OMP_AN:27535

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Cefsulodin sodium salt hydrate

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:31380) Cefsulodin sodium salt hydrate

  • chemical concentration= 18 ug/ml
  • normalized fitness= -3.26

public

OMP_AN:34306

OMP:0006057

decreased resistance to aminoglycoside

Relative to: OMP_AN:27528

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Streptomycin sulfate

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:32158) Streptomycin sulfate

  • chemical concentration= 0.05 ug/ml
  • normalized fitness= -3.42

public

OMP_AN:34307

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27588

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Triclosan/Irgasan

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:164200) Triclosan/Irgasan

  • chemical concentration= 0.05 ug/ml
  • normalized fitness= -4.53

public

OMP_AN:34308

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27569

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:EtOH

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:16236) EtOH

  • chemical concentration= 6 %
  • normalized fitness= -4.11

public

OMP_AN:34309

OMP:0007520

increased population growth in high osmolarity

Relative to: OMP_AN:27595

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:NaCl

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:26710) NaCl

  • chemical concentration= 600 mM
  • normalized fitness= 6.61

public

OMP_AN:34310

OMP:0007008

decreased population growth at acidic pH

Relative to: OMP_AN:27622

Genotype differences:

+lacZ4787(del)( +rffA742(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:MES-HOMOPIPES

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES

  • chemical concentration= pH 4
  • normalized fitness= -4.68
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