TableEdit

From OMPwiki

OMP ST:74316 ! Escherichia coli K-12 JW5437

You don't have sufficient rights on this wiki to edit tables. Perhaps you need to log in. Changes you make in the Table editor will not be saved back to the wiki

See Help for Help on this wiki. See the documentation for how to use the table editor

A conflict has been detected between the version of this table in the wiki and the copy you are editing.

Rows in conflict with the working copy:

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

public

OMP_AN:36138

OMP:0007960

decreased population growth at low temperature

Relative to: OMP_AN:27620


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:
  • temperature:20C
  • medium37C
  • medium
  • temperature:20C
  • medium:LB agar
  • medium:Low temperature

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

  • chemical concentration= 20 C
  • normalized fitness= -3.67

public

OMP_AN:36139

OMP:0007954

decreased population growth at high temperature

Relative to: OMP_AN:27621


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:
  • temperature:42C
  • medium37C
  • medium
  • temperature:42C
  • medium:LB agar
  • medium:High temperature

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

  • chemical concentration= 42 C
  • normalized fitness= -4.4

public

OMP_AN:36140

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27509


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Cisplatin-cis-Diamineplatinum(II) dichloride

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:27899) Cisplatin-cis-Diamineplatinum(II) dichloride

  • chemical concentration= 50 ug/ml
  • normalized fitness= -3.85

public

OMP_AN:36141

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27501


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Dibucaine

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:247956) Dibucaine

  • chemical concentration= 1.2 mM
  • normalized fitness= -3.26

public

OMP_AN:36142

OMP:0007074

increased growth factor requirement

Relative to: OMP_AN:27600


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:NH4Cl

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:31206) NH4Cl

  • chemical concentration= 9.5mm
  • normalized fitness= 2.94

public

OMP_AN:36143

OMP:0007033

increased utilization of inorganic nitrogen source

Relative to: OMP_AN:27610


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:NH4Cl

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:31206) NH4Cl

  • chemical concentration= 9.5mm
  • normalized fitness= 2.94

public

OMP_AN:36144

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27503


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Nitrofurantoin

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:71415) Nitrofurantoin

  • chemical concentration= 1.5 ug/ml
  • normalized fitness= -5.72

public

OMP_AN:36145

OMP:0007250

increased resistance to a chemical

Relative to: OMP_AN:27570


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Propidium iodide

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:51240) Propidium iodide

  • chemical concentration= 50 ug/ml
  • normalized fitness= 3.44

public

OMP_AN:36146

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27564


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Phleomycin

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:75044) Phleomycin

  • chemical concentration= 1 ug/ml
  • normalized fitness= -3.44

public

OMP_AN:36147

OMP:0007010

decreased population growth at alkaline pH

Relative to: OMP_AN:27623


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:TAPS

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (**SID:24900259) TAPS

  • chemical concentration= pH 8
  • normalized fitness= -4.04

public

OMP_AN:36148

OMP:0007011

increased population growth at alkaline pH

Relative to: OMP_AN:27623


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:TAPS

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (**SID:24900259) TAPS

  • chemical concentration= 9.5
  • normalized fitness= 3.61

public

OMP_AN:36149

OMP:0007008

decreased population growth at acidic pH

Relative to: OMP_AN:27622


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:MES-HOMOPIPES

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES

  • chemical concentration= 4.5
  • normalized fitness= -3.11

public

OMP_AN:36150

OMP:0007878

increased resistance to an antimicrobial agent

Relative to: OMP_AN:27565


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Polymyxin B sulfate

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:8310) Polymyxin B sulfate

  • chemical concentration= 4 ug/ml
  • normalized fitness= 3.68

public

OMP_AN:36151

OMP:0007878

increased resistance to an antimicrobial agent

Relative to: OMP_AN:27591


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)

  • chemical concentration= 0.1 + 50 ug/ml
  • normalized fitness= 5.16

public

OMP_AN:36152

OMP:0005097

increased resistance to UV radiation

Relative to: OMP_AN:27619


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:UV

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

  • chemical concentration= 18 sec
  • normalized fitness= 3.99

The rows shown above are different from the working copy.
This includes rows that have been edited and rows that are missing in the copy you are editing.

Copy desired rows to the working version until you have what you need, then continue editing.


Working copy:

The highlighted rows are different from the copy of the table from the wiki. This includes rows that have been edited and rows that you added. You can delete rows from the working copy in this view before continuing.
Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

public

OMP_AN:36138

OMP:0007960

decreased population growth at low temperature

Relative to: OMP_AN:27620


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:
  • temperature:20C
  • medium37C
  • medium
  • temperature:20C
  • medium:LB agar
  • medium:Low temperature

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

  • chemical concentration= 20 C
  • normalized fitness= -3.67

public

OMP_AN:36139

OMP:0007954

decreased population growth at high temperature

Relative to: OMP_AN:27621


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:
  • temperature:42C
  • medium37C
  • medium
  • temperature:42C
  • medium:LB agar
  • medium:High temperature

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

  • chemical concentration= 42 C
  • normalized fitness= -4.4

public

OMP_AN:36140

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27509


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Cisplatin-cis-Diamineplatinum(II) dichloride

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:27899) Cisplatin-cis-Diamineplatinum(II) dichloride

  • chemical concentration= 50 ug/ml
  • normalized fitness= -3.85

public

OMP_AN:36141

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27501


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Dibucaine

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:247956) Dibucaine

  • chemical concentration= 1.2 mM
  • normalized fitness= -3.26

public

OMP_AN:36142

OMP:0007074

increased growth factor requirement

Relative to: OMP_AN:27600


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:NH4Cl

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:31206) NH4Cl

  • chemical concentration= 9.5mm
  • normalized fitness= 2.94

public

OMP_AN:36143

OMP:0007033

increased utilization of inorganic nitrogen source

Relative to: OMP_AN:27610


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:MOPS
  • medium:NH4Cl

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:31206) NH4Cl

  • chemical concentration= 9.5mm
  • normalized fitness= 2.94

public

OMP_AN:36144

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27503


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Nitrofurantoin

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:71415) Nitrofurantoin

  • chemical concentration= 1.5 ug/ml
  • normalized fitness= -5.72

public

OMP_AN:36145

OMP:0007250

increased resistance to a chemical

Relative to: OMP_AN:27570


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Propidium iodide

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:51240) Propidium iodide

  • chemical concentration= 50 ug/ml
  • normalized fitness= 3.44

public

OMP_AN:36146

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27564


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Phleomycin

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:75044) Phleomycin

  • chemical concentration= 1 ug/ml
  • normalized fitness= -3.44

public

OMP_AN:36147

OMP:0007010

decreased population growth at alkaline pH

Relative to: OMP_AN:27623


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:TAPS

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (**SID:24900259) TAPS

  • chemical concentration= pH 8
  • normalized fitness= -4.04

public

OMP_AN:36148

OMP:0007011

increased population growth at alkaline pH

Relative to: OMP_AN:27623


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:TAPS

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (**SID:24900259) TAPS

  • chemical concentration= 9.5
  • normalized fitness= 3.61

public

OMP_AN:36149

OMP:0007008

decreased population growth at acidic pH

Relative to: OMP_AN:27622


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:MES-HOMOPIPES

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES

  • chemical concentration= 4.5
  • normalized fitness= -3.11

public

OMP_AN:36150

OMP:0007878

increased resistance to an antimicrobial agent

Relative to: OMP_AN:27565


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Polymyxin B sulfate

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:8310) Polymyxin B sulfate

  • chemical concentration= 4 ug/ml
  • normalized fitness= 3.68

public

OMP_AN:36151

OMP:0007878

increased resistance to an antimicrobial agent

Relative to: OMP_AN:27591


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)

  • chemical concentration= 0.1 + 50 ug/ml
  • normalized fitness= 5.16

public

OMP_AN:36152

OMP:0005097

increased resistance to UV radiation

Relative to: OMP_AN:27619


Genotype differences:

+lacZ4787(del)( +rpoS746(del) -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:UV

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

  • chemical concentration= 18 sec
  • normalized fitness= 3.99
Cancel