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OMP ST:73711 ! Escherichia coli K-12 JW3903

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A conflict has been detected between the version of this table in the wiki and the copy you are editing.

Rows in conflict with the working copy:

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

public

OMP_AN:34606

OMP:0007250

increased resistance to a chemical

Relative to: OMP_AN:27594

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:SDS (CHEBI:8984) +EDTA (CHEBI:64758)

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:64758 + CHEBI:8984) SDS (CHEBI:8984) +EDTA (CHEBI:64758)

  • chemical concentration= 0.5%/0.5mM %/0.5mM
  • normalized fitness= 4.16

public

OMP_AN:34607

OMP:0006057

decreased resistance to aminoglycoside

Relative to: OMP_AN:27525

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Amikacin sulfate salt (disulfate)

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:2638) Amikacin sulfate salt (disulfate)

  • chemical concentration= 0.2 ug/ml
  • normalized fitness= -4.06

public

OMP_AN:34608

OMP:0006045

increased resistance to beta-lactam compound

Relative to: OMP_AN:27530

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Amoxicillin

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:2676) Amoxicillin

  • chemical concentration= 1.5 ug/ml
  • normalized fitness= 4.29

public

OMP_AN:34609

OMP:0007902

increased resistance to bile acids

Relative to: OMP_AN:27587

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)

  • chemical concentration= 2 %
  • normalized fitness= 3.24

public

OMP_AN:34610

OMP:0007886

decreased resistance to a metal

Relative to: OMP_AN:27580

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Nickel stress-Ni(II)Cl2 hexahydrate

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:53542) Nickel stress-Ni(II)Cl2 hexahydrate

  • chemical concentration= 1 mM (LB)
  • normalized fitness= -3.72

public

OMP_AN:34611

OMP:0007902

increased resistance to bile acids

Relative to: OMP_AN:27584

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Taurocholic acid sodium salt hydrate

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CID:23687511) Taurocholic acid sodium salt hydrate

  • chemical concentration= 1 %
  • normalized fitness= 3.83

public

OMP_AN:34612

OMP:0006036

decreased resistance to macrolide

Relative to: OMP_AN:27521

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Spiramycin

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CID:6419898) Spiramycin

  • chemical concentration= 5 ug/ml
  • normalized fitness= -3.3

public

OMP_AN:34613

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27500

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Trimethoprim

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:45924) Trimethoprim

  • chemical concentration= 0.4 ug/ml
  • normalized fitness= -3.56

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Working copy:

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Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

public

OMP_AN:34606

OMP:0007250

increased resistance to a chemical

Relative to: OMP_AN:27594

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:SDS (CHEBI:8984) +EDTA (CHEBI:64758)

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:64758 + CHEBI:8984) SDS (CHEBI:8984) +EDTA (CHEBI:64758)

  • chemical concentration= 0.5%/0.5mM %/0.5mM
  • normalized fitness= 4.16

public

OMP_AN:34607

OMP:0006057

decreased resistance to aminoglycoside

Relative to: OMP_AN:27525

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Amikacin sulfate salt (disulfate)

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:2638) Amikacin sulfate salt (disulfate)

  • chemical concentration= 0.2 ug/ml
  • normalized fitness= -4.06

public

OMP_AN:34608

OMP:0006045

increased resistance to beta-lactam compound

Relative to: OMP_AN:27530

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Amoxicillin

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:2676) Amoxicillin

  • chemical concentration= 1.5 ug/ml
  • normalized fitness= 4.29

public

OMP_AN:34609

OMP:0007902

increased resistance to bile acids

Relative to: OMP_AN:27587

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)

  • chemical concentration= 2 %
  • normalized fitness= 3.24

public

OMP_AN:34610

OMP:0007886

decreased resistance to a metal

Relative to: OMP_AN:27580

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Nickel stress-Ni(II)Cl2 hexahydrate

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:53542) Nickel stress-Ni(II)Cl2 hexahydrate

  • chemical concentration= 1 mM (LB)
  • normalized fitness= -3.72

public

OMP_AN:34611

OMP:0007902

increased resistance to bile acids

Relative to: OMP_AN:27584

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Taurocholic acid sodium salt hydrate

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CID:23687511) Taurocholic acid sodium salt hydrate

  • chemical concentration= 1 %
  • normalized fitness= 3.83

public

OMP_AN:34612

OMP:0006036

decreased resistance to macrolide

Relative to: OMP_AN:27521

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Spiramycin

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CID:6419898) Spiramycin

  • chemical concentration= 5 ug/ml
  • normalized fitness= -3.3

public

OMP_AN:34613

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27500

Genotype differences:

+lacZ4787(del)( +hslV720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Trimethoprim

ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072

towards some (CHEBI:45924) Trimethoprim

  • chemical concentration= 0.4 ug/ml
  • normalized fitness= -3.56
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