Campos 2018 Escherichia coli data query

Background

Browse and analyze data from Campos et al., (Molecular Systems Biology 2018)^[1]

This dataset includes measurements of 26 phenotypic features for 4,227 single-gene deletion mutants of E. coli strain BW25113. These mutants were obtained from the Keio collection. Each mutant strain was characterized for 19 morphological and 2 growth features, while 3,949 of them were also characterized for 5 features related to late cell cycle steps.

Browse all data

You can browse or download the following datasets:

Strain names

Morphological scores

Cell constriction and nucleoid separation scores

Correlations/Similarities among strains

Strains

The experiments and analyses were done with the E. coli strains of the Keio single-gene-deletion library (Babu et al., 2009).

Normalized data

Scores are obtained from raw data after temporal and spatial bias corrections. They can be seen as direct measurements of each phenotype feature.

Scores

The scores are transformed by IQR of a standard normal distribution. |scores|>=3 were selected as significant phenotypes.

Correlation

The correlation between two strains is the Pearson correlation coefficient of the two strains' scores across all conditions.

References

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