Difference between revisions of "Sandbox"

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Latest revision as of 00:03, 20 February 2020

You can add free text to the wiki.


Strain Name

BW25113

Synonyms
Taxon Information
  • Pangenome: Eschericia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

F- DE(araD-araB)567 lacZ4787(del)(::rrnB-3) LAM- rph-1 DE(rhaD-rhaB)568 hsdR514

Strain Reference
Strain availability

CGSC

Ancestry

ancestor:OMP ST:174 ! Escherichia coli K-12 W1485

Annotated phenotypes


how do I add italics?


Phenotype of Taxon Information Genotype Information (if known) Condition Information OMP ID OMP Term Name ECO ID ECO Term Name Notes Status

a mutation or genetic difference within a strain

  • Taxon: A
  • Strain: B
  • Substrain: C
  • NCBI Taxon ID: D
  • Genotype of Reference Strain:
  • Reference Condition:

a mutation or genetic difference within a strain

  • Taxon: A
  • Strain: B
  • Substrain: C
  • NCBI Taxon ID: D
  • Genotype of Reference Strain:
  • Reference Condition:
  • Experimental Condition: 10 mM aspartate




Testing things have been moved over to the development site. If this code doesn't work there, then we've got a problem. --DanielRenfro 21:05, 5 May 2011 (UTC)


<methodinput> type=create bgcolor = #dddddd labeltext=Create a new Methods page: editintro=MediaWiki: buttonlabel=Create preload=Template:Method width=32 break=no </methodinput>


Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:50

OMP:0000017

presence of endospore formation

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:30
  • medium:sporulation medium

PMID:2842295[2]

OMP_AN:51

OMP:0000035

malformed pilus

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:37
  • medium:LB

PMID:12736[3]

OMP_AN:7750

OMP:0000052

presence of positive chemotaxis

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • pH:pH 7
  • temperature:30C
  • medium:maltose
  • medium:minimal chemotaxis medium
ECO:0005803

motility assay evidence

PMID:5335897[4]

maltose

OMP_AN:27249

OMP:0000013

decreased endospore formation

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • pH:7.0
  • temperature:37C
  • medium:BHI medium

PMID:2842295[2]

OMP_AN:27368

OMP:0007595

presence of population growth

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • temperature:25C
  • medium:lysine agar
ECO:0001165

colony counting evidence used in manual assertion

PMID:33131545335[5]



Strain Gene deletion L (CV_L) W (CV_W) A (CV_A) V (CV_V) SA (CV_SA) P (CV_P) SAV (CV_SAV) C (CV_C) Ar (CV_Ar) CV_DR NA (CV_NA) Morpho-Island

JWxxxx

dedD

9.96 (17.54)

-2.30 (3.07)

8.09 (12.99)

5.68 (10.87)

6.99 (11.16)

22

hfq*


  1. Datsenko, KA & Wanner, BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U.S.A. 97 6640-5 PubMed OMPwiki page
  2. 2.0 2.1 Kato, J et al. (1988) Gene organization in the region containing a new gene involved in chromosome partition in Escherichia coli. J. Bacteriol. 170 3967-77 PubMed OMPwiki page
  3. Piggot, PJ & Coote, JG (1976) Genetic aspects of bacterial endospore formation. Bacteriol Rev 40 908-62 PubMed OMPwiki page
  4. Armstrong, JB et al. (1967) Nonchemotactic mutants of Escherichia coli. J. Bacteriol. 93 390-8 PubMed OMPwiki page
  5. () PubMed OMPwiki page