OMP ST:920 ! Escherichia coli K-12 JW1525

From OMPwiki

Strain Summary

Strain Name

Escherichia_coli_K-12_JW1525

Synonyms

BW25113 marB753(del)::kan, ECK1525

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 marB753(del)::kan

Strain Reference
Strain availability

CGSC

Ancestry

parent:OMP ST:800 ! Strain:Escherichia coli K-12 BW25113

Annotated phenotypes



Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:648

OMP:0006063

increased resistance to tetracycline

Relative to: OMP_AN:647


Genotype differences:

+marB753(del)


Condition differences:

no differences

medium:tetracycline (1 ug ml-1)

PMID:21185072[2]

CHEBI:27902 tetracycline

fitness score = 3.01

OMP_AN:650

OMP:0006068

increased resistance to chloramphenicol

Relative to: OMP_AN:649


Genotype differences:

+marB753(del)


Condition differences:

no differences

medium:chloramphenicol (2.0 ug ml-1)

PMID:21185072[2]

CHEBI:17698 chloramphenicol

fitness score = 3.57

OMP_AN:654

OMP:0006041

increased resistance to quinolone

Relative to: OMP_AN:653


Genotype differences:

+marB753(del)


Condition differences:

no differences

medium:streptonigrin (0.5 ug ml-1)

PMID:21185072[2]

CHEBI:9287 streptonigrin

fitness score = 3.57

OMP_AN:656

OMP:0006063

increased resistance to tetracycline

Relative to: OMP_AN:655


Genotype differences:

+marB753(del)


Condition differences:

no differences

medium:minocycline (0.5 ug ml-1)

PMID:21185072[2]

CHEBI:50694 minocycline

fitness score = 3.70

OMP_AN:658

OMP:0007362

increased resistance to aminoglycoside

Relative to: OMP_AN:657


Genotype differences:

+marB753(del)


Condition differences:

no differences

medium:puromycin (25 ug ml-1)

PMID:21185072[2]

CHEBI:17939 puromycin

fitness score = 3.72

OMP_AN:660

OMP:0007384

increased resistance to a benzamide

Relative to: OMP_AN:659


Genotype differences:

+marB753(del)


Condition differences:

no differences

medium:CHIR-090 (0.075 ug ml-1)

PMID:21185072[2]

CHEBI:134107 CHIR-090

fitness score = 3.51


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page
  2. 2.0 2.1 2.2 2.3 2.4 2.5 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page