OMP ST:903 ! Escherichia coli K-12 CC118

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Revision as of 13:30, 13 August 2019 by Siegele (talk | contribs) (→‎Notes)

Strain Summary

Strain Name

CC118

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

F- LAM- araD139 DE(ara leu)7697 DE(lacX74) phoA20(del) galE galK thi rpsE rpoB argE(Am) recA1

Strain Reference

PMID:2999794[1]

Strain availability
Ancestry
Annotated phenotypes


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Notes

DElacX74 was later renamed DE(codB-lacI)3. This is a deletion that includes the entire lac operon and came from strain Hfr 3000 X74 of Jacob.

References on the extent of the deletion:

  • Sung, Y.-C., P.M. Anderson, J.A. Fuchs 1987. Characterization of high-level expression and sequencing of the Escherichia coli K-12 cynS gene encoding cyanase. J.Bacteriol. 169:5224-5230
  • Ferrandez, A., J.L. Garcia, E. Diaz 1997. Genetic characterization and expression in heterologous hosts of the 3-(3-hydroxyphenyl)propionate catabolic pathway of Escherichia coli K-12. J.Bacteriol. 179:2573-2581
  • Gerdes, SY, MD Scholle, M D'Souza, A Bernal, MV Baev, M Farrell, OV Kurnasov, MD Daugherty, F Mseeh, BM Polanuyer, JW Campbell, S Anantha, KY Shatalin, SA Chowdhury, MY Fonstein, AL Osterman 2002. From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways. J. Bacteriol. 184(16):4555-72.
  • Durfee, T, R Nelson, S Baldwin, G Plunkett, V Burland, B Mau, JF Petrosino, X Qin, DM Muzny, M Ayele, RA Gibbs, B Csorgo, G Posfai, GM Weinstock, FR Blattner 2008. The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190(7):2597-606.

Shown by Durfee et al. to extend from codon 292 of yahG through mhpE.

Shown by Ferrandez et al. 1997 to extend to mhpD.

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:367

sensitive to cloacin

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:cell suspension containing cloaking DF13
  • temperature:37C
  • medium:nutrient broth

PMID:2013565[2]

cloacin DF13


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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Manoil, C & Beckwith, J (1985) TnphoA: a transposon probe for protein export signals. Proc. Natl. Acad. Sci. U.S.A. 82 8129-33 PubMed OMPwiki page
  2. ↑ Wooldridge, KG & Williams, PH (1991) Sensitivity of Escherichia coli to cloacin DF13 involves the major outer membrane protein OmpF. J. Bacteriol. 173 2420-4 PubMed OMPwiki page
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