Difference between revisions of "OMP ST:903 ! Escherichia coli K-12 CC118"
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==Notes== | ==Notes== | ||
+ | DE''lacX74'' was later renamed [http://cgsc2.biology.yale.edu/Mutation.php?ID=4694 DE''(codB-lacI)3''.] This is a deletion that includes the entire ''lac'' operon and came from strain Hfr 3000 X74 of Jacob. | ||
+ | References on the extent of the deletion: | ||
+ | *Sung, Y.-C., P.M. Anderson, J.A. Fuchs 1987. Characterization of high-level expression and sequencing of the Escherichia coli K-12 cynS gene encoding cyanase. J.Bacteriol. 169:5224-5230 | ||
+ | *Ferrandez, A., J.L. Garcia, E. Diaz 1997. Genetic characterization and expression in heterologous hosts of the 3-(3-hydroxyphenyl)propionate catabolic pathway of Escherichia coli K-12. J.Bacteriol. 179:2573-2581 | ||
+ | *Gerdes, SY, MD Scholle, M D'Souza, A Bernal, MV Baev, M Farrell, OV Kurnasov, MD Daugherty, F Mseeh, BM Polanuyer, JW Campbell, S Anantha, KY Shatalin, SA Chowdhury, MY Fonstein, AL Osterman 2002. From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways. J. Bacteriol. 184(16):4555-72. | ||
+ | *Durfee, T, R Nelson, S Baldwin, G Plunkett, V Burland, B Mau, JF Petrosino, X Qin, DM Muzny, M Ayele, RA Gibbs, B Csorgo, G Posfai, GM Weinstock, FR Blattner 2008. The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190(7):2597-606. | ||
+ | |||
+ | Shown by Durfee et al. to extend from codon 292 of ''yahG'' through ''mhpE''. | ||
+ | |||
+ | Shown by Ferrandez et al. 1997 to extend to ''mhpD''. | ||
==Phenotype Annotation== | ==Phenotype Annotation== |
Revision as of 13:30, 13 August 2019
Contents
Strain Summary
Strain Name |
CC118 |
---|---|
Synonyms | |
Taxon Information |
|
Genotype |
F- LAM- araD139 DE(ara leu)7697 DE(lacX74) phoA20(del) galE galK thi rpsE rpoB argE(Am) recA1 |
Strain Reference | |
Strain availability | |
Ancestry | |
Annotated phenotypes |
|
Notes
DElacX74 was later renamed DE(codB-lacI)3. This is a deletion that includes the entire lac operon and came from strain Hfr 3000 X74 of Jacob.
References on the extent of the deletion:
- Sung, Y.-C., P.M. Anderson, J.A. Fuchs 1987. Characterization of high-level expression and sequencing of the Escherichia coli K-12 cynS gene encoding cyanase. J.Bacteriol. 169:5224-5230
- Ferrandez, A., J.L. Garcia, E. Diaz 1997. Genetic characterization and expression in heterologous hosts of the 3-(3-hydroxyphenyl)propionate catabolic pathway of Escherichia coli K-12. J.Bacteriol. 179:2573-2581
- Gerdes, SY, MD Scholle, M D'Souza, A Bernal, MV Baev, M Farrell, OV Kurnasov, MD Daugherty, F Mseeh, BM Polanuyer, JW Campbell, S Anantha, KY Shatalin, SA Chowdhury, MY Fonstein, AL Osterman 2002. From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways. J. Bacteriol. 184(16):4555-72.
- Durfee, T, R Nelson, S Baldwin, G Plunkett, V Burland, B Mau, JF Petrosino, X Qin, DM Muzny, M Ayele, RA Gibbs, B Csorgo, G Posfai, GM Weinstock, FR Blattner 2008. The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190(7):2597-606.
Shown by Durfee et al. to extend from codon 292 of yahG through mhpE.
Shown by Ferrandez et al. 1997 to extend to mhpD.
Phenotype Annotation
Annotation ID | not | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
---|---|---|---|---|---|---|---|---|---|---|
OMP_AN:367 |
sensitive to cloacin |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
| ||||||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Manoil, C & Beckwith, J (1985) TnphoA: a transposon probe for protein export signals. Proc. Natl. Acad. Sci. U.S.A. 82 8129-33 PubMed OMPwiki page
- ↑ Wooldridge, KG & Williams, PH (1991) Sensitivity of Escherichia coli to cloacin DF13 involves the major outer membrane protein OmpF. J. Bacteriol. 173 2420-4 PubMed OMPwiki page