OMP ST:867 ! Escherichia coli K-12 RP437

From OMPwiki
Revision as of 04:31, 22 November 2020 by Siegele (talk | contribs) (Table edited by $2 via TableEdit)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Strain Summary

Strain Name

RP437

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

F- Lambda- thr-1 araC14 leuB6(Am) fhuA31 lacY1 tsx-78 eda-50 hisG4(Oc) rfbC1 rpsL136(strR) xylA5 mtl-1 metF159(Am) thiE1

Strain Reference

PMID:7045071[1]

Strain availability

CGSC#: 12122

Ancestry
Annotated phenotypes


edit table

Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:538

OMP:0000052

presence of positive chemotaxis

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:35C
  • medium:motility medium
  • medium:phenol (5 mM)
 ECO:0005607

tethered cell assay evidence

PMID:3025180[2]

CHEBI:15882 phenol

S. typhimurium ST1 phenol is a repellent

OMP_AN:606

OMP:0000052

presence of positive chemotaxis

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:30C
  • medium:chemotaxis buffer
  • medium:thymine (20 mM)
 ECO:0005609

capillary assay evidence

PMID:18065551[3]

CHEBI:17821 thymine

OMP_AN:607

OMP:0000052

presence of positive chemotaxis

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:30C
  • medium:chemotaxis buffer
  • medium:uracil (20 mM)
 ECO:0005609

capillary assay evidence

PMID:18065551[3]

CHEBI:17568 uracil

OMP_AN:608

OMP:0000054

absence of positive chemotaxis

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:30C
  • medium:chemotaxis buffer
  • medium:cytosine (20 mM)
 ECO:0005609

capillary assay evidence

PMID:18065551[3]

CHEBI:16040 cytosine

OMP_AN:728

OMP:0000005

presence of motility

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • pH:5.5 and 7
  • medium:Motility buffer
 ECO:0001232

microscopy evidence used in manual assertion

PMID:7045071[1]

light microscopy

OMP_AN:1400

OMP:0000111

presence of motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:pCA24N
  • temperature:37C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:17391508[4]

OMP_AN:1401

same phenotype as reference strain

OMP:0005324

altered cell motility by swimming

Relative to: OMP_AN:1400

Genotype differences:

no differences

Condition differences:

other:pCA24N-RecA-HisTag? ENVO:?pCA24N-RecA-Htg

  • other:pCA24N-RecA-HisTag
  • temperature:37C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:17391508[4]

NCBI Taxonomy ID: pCA24N

OMP_AN:1402

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:1353

Genotype differences:

+thr-1 +araC14 +leuB6(Am) +fhuA31 +lacY1 +tsx-78 +eda-50 +hisG4(Oc) +rfbC1 +rpsL136(strR) +xylA5 +mtl-1 +metF159(Am) +thiE1 -rph-1

Condition differences:

no differences

  • temperature:37C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:17391508[4]

OMP_AN:27266

OMP:0000067

presence of motility by swarming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:30C
  • medium:Glycerol minimal medium
 ECO:0007192

motility assay evidence used in manual assertion

PMID:8503954[5]

Table 2

OMP_AN:27267

OMP:0000111

presence of motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:30C
  • medium:Glycerol minimal medium
 ECO:0007192

motility assay evidence used in manual assertion

PMID:8503954[5]

Table 2

OMP_AN:27268

OMP:0000052

presence of positive chemotaxis

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:30C
  • medium:Glycerol minimal medium
 ECO:0007192

motility assay evidence used in manual assertion

PMID:8503954[5]

Table 2

edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Parkinson, JS & Houts, SE (1982) Isolation and behavior of Escherichia coli deletion mutants lacking chemotaxis functions. J. Bacteriol. 151 106-13 PubMed OMPwiki page
  2. ↑ Imae, Y et al. (1987) Phenol: a complex chemoeffector in bacterial chemotaxis. J. Bacteriol. 169 371-9 PubMed OMPwiki page
  3. ↑ 3.0 3.1 3.2 Liu, X & Parales, RE (2008) Chemotaxis of Escherichia coli to pyrimidines: a new role for the signal transducer tap. J. Bacteriol. 190 972-9 PubMed OMPwiki page
  4. ↑ 4.0 4.1 4.2 Gómez-Gómez, JM et al. (2007) A novel role for RecA under non-stress: promotion of swarming motility in Escherichia coli K-12. BMC Biol. 5 14 PubMed OMPwiki page
  5. ↑ 5.0 5.1 5.2 Dailey, FE & Berg, HC (1993) Mutants in disulfide bond formation that disrupt flagellar assembly in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 90 1043-7 PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=OMP_ST:867_!_Escherichia_coli_K-12_RP437&oldid=143396"