Difference between revisions of "OMP ST:867 ! Escherichia coli K-12 RP437"
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OMP:0000111 | OMP:0000111 | ||
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| − | presence of | + | presence of motility by swimming |
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Relative to: | Relative to: | ||
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Nothing to compare<br/> | Nothing to compare<br/> | ||
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| + | *other:pCA24N | ||
*temperature:37C | *temperature:37C | ||
*medium:swimming motility medium | *medium:swimming motility medium | ||
| − | |||
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ECO:0005803 | ECO:0005803 | ||
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OMP_AN:1401 | OMP_AN:1401 | ||
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| − | + | same phenotype as reference strain | |
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OMP:0005324 | OMP:0005324 | ||
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no differences | no differences | ||
<hr>Condition differences:<br> | <hr>Condition differences:<br> | ||
| − | ENVO: | + | other:pCA24N-RecA-HisTag? |
| + | ENVO:?pCA24N-RecA-Htg | ||
| | | | ||
| + | *other:pCA24N-RecA-HisTag | ||
*temperature:37C | *temperature:37C | ||
*medium:swimming motility medium | *medium:swimming motility medium | ||
| − | |||
| | | | ||
ECO:0005803 | ECO:0005803 | ||
Revision as of 04:27, 22 November 2020
Contents
Strain Summary
| Strain Name |
RP437 |
|---|---|
| Synonyms | |
| Taxon Information |
|
| Genotype |
F- thr-1 araC14 leuB6(Am) fhuA31 lacY1 tsx-78 Lambda- eda-50 hisG4(Oc) rfbC1 rpsL136(strR) xylA5 mtl-1 metF159(Am) thiE1 |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:538 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005607 |
tethered cell assay evidence |
CHEBI:15882 phenol |
S. typhimurium ST1 phenol is a repellent | ||
|
OMP_AN:606 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17821 thymine |
|||
|
OMP_AN:607 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17568 uracil |
|||
|
OMP_AN:608 |
OMP:0000054 |
absence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16040 cytosine |
|||
|
OMP_AN:728 |
OMP:0000005 |
presence of motility |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0001232 |
microscopy evidence used in manual assertion |
light microscopy | |||
|
OMP_AN:1400 |
OMP:0000111 |
presence of motility by swimming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:1401 |
same phenotype as reference strain |
OMP:0005324 |
altered cell motility by swimming |
Relative to: OMP_AN:1400 Genotype differences: no differences Condition differences: other:pCA24N-RecA-HisTag? ENVO:?pCA24N-RecA-Htg |
|
ECO:0005803 |
motility assay evidence |
|||
|
OMP_AN:1402 |
OMP:0007092 |
decreased cell motility by swarming |
Relative to: OMP_AN:1353 Genotype differences: +thr-1 +araC14 +leuB6(Am) +fhuA31 +lacY1 +tsx-78 +eda-50 +hisG4(Oc) +rfbC1 +rpsL136(strR) +xylA5 +mtl-1 +metF159(Am) +thiE1 -rph-1 Condition differences: no differences |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:27266 |
OMP:0000067 |
presence of motility by swarming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007192 |
motility assay evidence used in manual assertion |
Table 2 | |||
|
OMP_AN:27267 |
OMP:0000111 |
presence of motility by swimming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007192 |
motility assay evidence used in manual assertion |
Table 2 | |||
|
OMP_AN:27268 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007192 |
motility assay evidence used in manual assertion |
Table 2 | |||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ 1.0 1.1 Parkinson, JS & Houts, SE (1982) Isolation and behavior of Escherichia coli deletion mutants lacking chemotaxis functions. J. Bacteriol. 151 106-13 PubMed OMPwiki page
- ↑ Imae, Y et al. (1987) Phenol: a complex chemoeffector in bacterial chemotaxis. J. Bacteriol. 169 371-9 PubMed OMPwiki page
- ↑ 3.0 3.1 3.2 Liu, X & Parales, RE (2008) Chemotaxis of Escherichia coli to pyrimidines: a new role for the signal transducer tap. J. Bacteriol. 190 972-9 PubMed OMPwiki page
- ↑ 4.0 4.1 4.2 Gómez-Gómez, JM et al. (2007) A novel role for RecA under non-stress: promotion of swarming motility in Escherichia coli K-12. BMC Biol. 5 14 PubMed OMPwiki page
- ↑ 5.0 5.1 5.2 Dailey, FE & Berg, HC (1993) Mutants in disulfide bond formation that disrupt flagellar assembly in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 90 1043-7 PubMed OMPwiki page
e
o
- OMP:0000005 ! presence of motility
- OMP:0000052 ! presence of positive chemotaxis
- OMP:0000054 ! absence of positive chemotaxis
- OMP:0000067 ! presence of motility by swarming
- OMP:0000111 ! presence of motility by swimming
- OMP:0005324 ! altered cell motility by swimming
- OMP:0007092 ! decreased motility by swarming
