Difference between revisions of "OMP ST:773 ! Escherichia coli K-12 AW518"

Revision as of 15:10, 25 May 2016

Strain Summary

Strain Name	AW518
Synonyms
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: Taxon: K-12 NCBI Taxonomy ID: NCBI Taxon ID: 83333
Genotype	Lambda- araC14 fhuA31 galK2(Oc) galT22 glnX44(AS) hisG4(Oc) lacY1 leuB6(Am) mgl-51 mtl-1 rfbC1 rpsL136(StrR) thiE1 thr-1 tsr-1 tsx-78 xylA5
Strain Reference	PMID:4884810^[1]
Strain availability
Ancestry	parent:AW405
Annotated phenotypes
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Notes

AW405 is a derivative of AW330. The his-4 allele was introduced from strain AT1372[2] by transduction with P1, followed by penicillin selection.^[2]

Phenotype Annotation

Annotation ID	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:47	OMP:0000005	presence of cell motility	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:35C medium:semi-solid tryptone agar	ECO:0000181	in vitro assay evidence	PMID:4916925^[3]
OMP_AN:48	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:45 Genotype differences: +tsr-1 Condition differences: no differences	temperature:35C medium:semi-solid tryptone agar	ECO:0000181	in vitro assay evidence	PMID:4916925^[3]
OMP_AN:49	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:46 Genotype differences: +tsr-1 Condition differences: medium:buffer + serine (CHEBIbuffer;serine (CHEBI	medium:buffer + serine (CHEBI:17115)	ECO:0000181	in vitro assay evidence	PMID:4916925^[3]
OMP_AN:341	OMP:0007005	decreased negative chemotaxis	Relative to: OMP_AN:403 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:acetate medium:chemotaxis medium	ECO:0005608		PMID:333433^[4]	CHEBI:30089 acetate
OMP_AN:342	OMP:0007005	decreased negative chemotaxis	Relative to: OMP_AN:404 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:benzoate medium:chemotaxis medium	ECO:0005608		PMID:333433^[4]	CHEBI:16150 benzoate
OMP_AN:343	OMP:0007005	decreased negative chemotaxis	Relative to: OMP_AN:405 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:indole	ECO:0005608		PMID:333433^[4]	CHEBI:35581 indole
OMP_AN:344	OMP:0007005	decreased negative chemotaxis	Relative to: OMP_AN:406 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:leucine	ECO:0005608		PMID:333433^[4]	CHEBI:15603 leucine
OMP_AN:345	OMP:0007053	increased positive chemotaxis	Relative to: OMP_AN:105 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:aspartate medium:chemotaxis medium	ECO:0005608		PMID:333433^[4]	CHEBI:17053 aspartate
OMP_AN:346	OMP:0007053	increased positive chemotaxis	Relative to: OMP_AN:102 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:maltose	ECO:0005608		PMID:333433^[4]	CHEBI:17306 maltose
OMP_AN:347	OMP:0007053	increased positive chemotaxis	Relative to: OMP_AN:401 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:galactose	ECO:0005609		PMID:333433^[4]	CHEBI:28260 galactose
OMP_AN:348	OMP:0007053	increased positive chemotaxis	Relative to: OMP_AN:402 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:ribose	ECO:0005609		PMID:333433^[4]	CHEBI:33942 ribose
OMP_AN:349	OMP:0007054	increased negative chemotaxis	Relative to: OMP_AN:407 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:Ni(II) medium:chemotaxis medium	ECO:0005608		PMID:333433^[4]
OMP_AN:350	OMP:0007054	increased negative chemotaxis	Relative to: OMP_AN:408 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:Co(II) medium:chemotaxis medium	ECO:0005608		PMID:333433^[4]	CHEBI:48828 Co(II)
OMP_AN:422	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:421 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:serine	ECO:0005608		PMID:333433^[4]	CHEBI:17115 serine
OMP_AN:494	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:492 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:alanine medium:chemotaxis medium	ECO:0005609		PMID:4562400^[5]	CHEBI:16977 alanine	Threshold for response increased
OMP_AN:495	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:488 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:asparagine medium:chemotaxis medium	ECO:0005609		PMID:4562400^[5]	CEHBI:17196 asparagine	Threshold for response increased
OMP_AN:496	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:489 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:cysteine	ECO:0005609		PMID:4562400^[5]	CHEBI:17561 cysteine	Threshold for response increased
OMP_AN:497	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:491 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:glycine	ECO:0005609		PMID:4562400^[5]		Threshold for response increased
OMP_AN:498	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:486 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:serine	ECO:0005609		PMID:4562400^[5]	CHEBI:17715 serine	Threshold for response increased
OMP_AN:499	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:487 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:threonine	ECO:0005609		PMID:4562400^[5]	CHEBI:16857 threonine	Threshold for response incresased
OMP_AN:500	OMP:0007053	increased positive chemotaxis	Relative to: OMP_AN:493 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:methionine	ECO:0005609		PMID:4562400^[5]	CHEBI:16643 methionine
OMP_AN:562	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:543 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:L-serine medium:chemotaxis medium	ECO:0005609		PMID:6350273^[6]	CHEBI:17115 L-serine	Synthetic amino acid
OMP_AN:563	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:547 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:chemotaxis medium medium:glycine	ECO:0005609		PMID:6350273^[6]	CHEBI:15428 glycine	Synthetic amino acid
OMP_AN:564	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:550 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:L-threonine medium:chemotaxis medium	ECO:0005609		PMID:6350273^[6]	CHEBI:16857 L-threonine	Synthetic amino acid
OMP_AN:565	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:551 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:L-proline medium:chemotaxis medium	ECO:0005609		PMID:6350273^[6]	CHEBI:17203 L-proline	Synthetic amino acid
OMP_AN:566	OMP:0007005	decreased negative chemotaxis	Relative to: OMP_AN:553 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:L-histidine medium:chemotaxis medium	ECO:0005609		PMID:6350273^[6]	CHEBI:15971 L-histidine	Synthetic amino acid
OMP_AN:567	OMP:0007005	decreased negative chemotaxis	Relative to: OMP_AN:554 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:L-isoleucine medium:chemotaxis medium	ECO:0005609		PMID:6350273^[6]	CHEBI:17191 L-isoleucine	Synthetic amino acid
OMP_AN:568	OMP:0007005	decreased negative chemotaxis	Relative to: OMP_AN:555 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:L-leucine medium:chemotaxis medium	ECO:0005609		PMID:6350273^[6]	CHEBI:15603 L-leucine	Synthetic amino acid
OMP_AN:569	OMP:0007005	decreased negative chemotaxis	Relative to: OMP_AN:557 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:L-tryptophan medium:chemotaxis medium	ECO:0005609		PMID:6350273^[6]	CHEBI:16828 L-tryptophan	Synthetic amino acid
OMP_AN:585	OMP:0000054	absence of positive chemotaxis	Relative to: OMP_AN:573 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:LiCl medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]	CHEBI:48607 LiCl	Salt chemotaxis
OMP_AN:586	OMP:0000054	absence of positive chemotaxis	Relative to: OMP_AN:578 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:MgCl2 medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]	CHEBI:6636 MgCl2	Salt chemotaxis
OMP_AN:587	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:572 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:NH4Cl medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]	CHEBI:31206 NH4Cl	Salt chemotaxis
OMP_AN:588	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:576 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:RbCl medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]		Salt chemotaxis
OMP_AN:589	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:577 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:CsCl medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]		Salt chemotaxis
OMP_AN:590	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:582 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:NaF medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]	CHEBI:28741 NaF	Salt chemotaxis
OMP_AN:591	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:574 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:NaCl medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]	CHEBI:26710 NaCl	Salt chemotaxis
OMP_AN:592	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:584 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:NaBr medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]	CHEBI:63004 NaBr	Salt chemotaxis
OMP_AN:593	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:583 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:NaI medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]	CHEBI:33167 NaI	Salt chemotaxis
OMP_AN:594	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:575 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:KCl medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]	CHEBI:32588 KCl	Salt chemotaxis
OMP_AN:595	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:580 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:BaCl2 medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]	CHEBI:63317 BaCl2	Salt chemotaxis
OMP_AN:596	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:581 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:CaCl2 medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]	CHEBI:3312 CaCl2	Salt chemotaxis
OMP_AN:589	OMP:0007041	decreased positive chemotaxis	Relative to: OMP_AN:577 Genotype differences: +tsr-1 Condition differences: no differences	temperature:30C medium:CsCl medium:chemotaxis medium	ECO:0005609		PMID:2682648^[7]		Salt chemotaxis
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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

↑ Armstrong, JB & Adler, J (1969) Location of genes for motility and chemotaxis on the Escherichia coli genetic map. J. Bacteriol. 97 156-61 PubMed OMPwiki page
↑ Armstrong, JB & Adler, J (1967) Genetics of motility in Escherichia coli: complementation of paralysed mutants. Genetics 56 363-73 PubMed OMPwiki page
↑ ^3.0 ^3.1 ^3.2 Hazelbauer, GL et al. (1969) Escherichia coli mutants defective in chemotaxis toward specific chemicals. Proc. Natl. Acad. Sci. U.S.A. 64 1300-7 PubMed OMPwiki page
↑ ^4.00 ^4.01 ^4.02 ^4.03 ^4.04 ^4.05 ^4.06 ^4.07 ^4.08 ^4.09 ^4.10 Springer, MS et al. (1977) Sensory transduction in Escherichia coli: two complementary pathways of information processing that involve methylated proteins. Proc. Natl. Acad. Sci. U.S.A. 74 3312-6 PubMed OMPwiki page
↑ ^5.0 ^5.1 ^5.2 ^5.3 ^5.4 ^5.5 ^5.6 Mesibov, R & Adler, J (1972) Chemotaxis toward amino acids in Escherichia coli. J. Bacteriol. 112 315-26 PubMed OMPwiki page
↑ ^6.0 ^6.1 ^6.2 ^6.3 ^6.4 ^6.5 ^6.6 ^6.7 Hedblom, ML & Adler, J (1983) Chemotactic response of Escherichia coli to chemically synthesized amino acids. J. Bacteriol. 155 1463-6 PubMed OMPwiki page
↑ ^7.00 ^7.01 ^7.02 ^7.03 ^7.04 ^7.05 ^7.06 ^7.07 ^7.08 ^7.09 ^7.10 ^7.11 ^7.12 Qi, YL & Adler, J (1989) Salt taxis in Escherichia coli bacteria and its lack in mutants. Proc. Natl. Acad. Sci. U.S.A. 86 8358-62 PubMed OMPwiki page

[PMID:4884810-1] Armstrong, JB & Adler, J (1969) Location of genes for motility and chemotaxis on the Escherichia coli genetic map. J. Bacteriol. 97 156-61 PubMed OMPwiki page

[PMID:4861166-2] Armstrong, JB & Adler, J (1967) Genetics of motility in Escherichia coli: complementation of paralysed mutants. Genetics 56 363-73 PubMed OMPwiki page

[PMID:4916925-3] 3.0 ^3.1 ^3.2 Hazelbauer, GL et al. (1969) Escherichia coli mutants defective in chemotaxis toward specific chemicals. Proc. Natl. Acad. Sci. U.S.A. 64 1300-7 PubMed OMPwiki page

[PMID:333433-4] 4.00 ^4.01 ^4.02 ^4.03 ^4.04 ^4.05 ^4.06 ^4.07 ^4.08 ^4.09 ^4.10 Springer, MS et al. (1977) Sensory transduction in Escherichia coli: two complementary pathways of information processing that involve methylated proteins. Proc. Natl. Acad. Sci. U.S.A. 74 3312-6 PubMed OMPwiki page

[PMID:4562400-5] 5.0 ^5.1 ^5.2 ^5.3 ^5.4 ^5.5 ^5.6 Mesibov, R & Adler, J (1972) Chemotaxis toward amino acids in Escherichia coli. J. Bacteriol. 112 315-26 PubMed OMPwiki page

[PMID:6350273-6] 6.0 ^6.1 ^6.2 ^6.3 ^6.4 ^6.5 ^6.6 ^6.7 Hedblom, ML & Adler, J (1983) Chemotactic response of Escherichia coli to chemically synthesized amino acids. J. Bacteriol. 155 1463-6 PubMed OMPwiki page

[PMID:2682648-7] 7.00 ^7.01 ^7.02 ^7.03 ^7.04 ^7.05 ^7.06 ^7.07 ^7.08 ^7.09 ^7.10 ^7.11 ^7.12 Qi, YL & Adler, J (1989) Salt taxis in Escherichia coli bacteria and its lack in mutants. Proc. Natl. Acad. Sci. U.S.A. 86 8358-62 PubMed OMPwiki page

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Difference between revisions of "OMP ST:773 ! Escherichia coli K-12 AW518"

Revision as of 15:10, 25 May 2016

Contents

Strain Summary

Notes

Phenotype Annotation

Additional Information

Links

References

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 *medium:methionine
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-ECO:0000181
+ECO:0005609
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-in vitro assay evidence
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 PMID:4562400
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 CHEBI:16643 methionine
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-Capillary assay
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-ECO:0000181
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-in vitro assay evidence
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 CHEBI:17115 L-serine
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-Capillary assay
 Synthetic amino acid
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 *medium:glycine
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+ECO:0005609
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 CHEBI:15428 glycine
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+|-
+|
+OMP_AN:589
+|
+|
+OMP:0007041
+|
+decreased positive chemotaxis
+|
+Relative to: OMP_AN:577
+<hr>Genotype differences:<br>
++tsr-1
+<hr>Condition differences:<br>
+no differences
+|
+*temperature:30C
+*medium:CsCl
+*medium:chemotaxis medium
+|
+ECO:0005609
+|
+|
+PMID:2682648
+|
+|
+Salt chemotaxis
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