Difference between revisions of "OMP ST:773 ! Escherichia coli K-12 AW518"

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(Table edited by Siegele via TableEdit)
 
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||
 
||
 
*Pangenome: Escherichia coli
 
*Pangenome: Escherichia coli
−
*Subspecies and/or strain: Taxon: K-12
+
*Subspecies and/or strain: K-12
−
*NCBI Taxonomy ID: NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
+
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
Line 40: Line 40:
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 
||
 
||
−
parent:AW405
+
parent:OMP ST:772 ! Escherichia coli K-12 AW405
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
Line 47: Line 47:
  
 
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+
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.5935.J556e2aea143ac&page=6973&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
 
|}
 
|}
 
<noinclude>
 
<noinclude>
−
<!-- OMP category tags -->[[Category:Strains that need OMP_ST accessions]]
+
<!-- OMP category tags -->[[Category:OMP ST:772 ! Escherichia coli K-12 AW405 derivatives]]
 
</noinclude>
 
</noinclude>
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.5935.J556e2aea143ac--></protect>
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.5935.J556e2aea143ac--></protect>
Line 57: Line 57:
  
 
AW405 is a derivative of AW330. The his-4 allele was introduced from strain AT1372[2] by transduction with P1, followed by penicillin selection.<ref name='PMID:4861166'/>
 
AW405 is a derivative of AW330. The his-4 allele was introduced from strain AT1372[2] by transduction with P1, followed by penicillin selection.<ref name='PMID:4861166'/>
 +
 +
The ''tsr'' mutation in AW518 was named ''tsr-1'' in Hedblom and Adler<ref name='PMID:677365'/>.
  
 
==Phenotype Annotation==
 
==Phenotype Annotation==
Line 68: Line 70:
 
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z556e2aea173f0"  class=" tableEdit OMP_annotation_table dataTable"   
 
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z556e2aea173f0"  class=" tableEdit OMP_annotation_table dataTable"   
 
|- align='left' bgcolor='#CCCCFF'
 
|- align='left' bgcolor='#CCCCFF'
−
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
+
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
|-  
 
|-  
 
|
 
|
Line 176: Line 178:
 
*medium:chemotaxis medium
 
*medium:chemotaxis medium
 
|
 
|
−
ECO:0000181
+
ECO:0007187
 
|
 
|
−
in vitro assay evidence
+
tumble frequency assay evidence used in manual assertion
 
|
 
|
 
PMID:333433
 
PMID:333433
Line 184: Line 186:
 
CHEBI:30089 acetate
 
CHEBI:30089 acetate
 
|
 
|
−
Temporal assay
+
 
|-  
 
|-  
 
|
 
|
Line 206: Line 208:
 
*medium:chemotaxis medium
 
*medium:chemotaxis medium
 
|
 
|
−
ECO:0000181
+
ECO:0005608
 
|
 
|
−
in vitro assay evidence
+
tumble frequency assay evidence
 
|
 
|
 
PMID:333433
 
PMID:333433
Line 214: Line 216:
 
CHEBI:16150 benzoate
 
CHEBI:16150 benzoate
 
|
 
|
−
Temporal assay
+
 
|-  
 
|-  
 
|
 
|
Line 236: Line 238:
 
*medium:indole
 
*medium:indole
 
|
 
|
−
ECO:0000181
+
ECO:0005608
 
|
 
|
−
in vitro assay evidence
+
tumble frequency assay evidence
 
|
 
|
 
PMID:333433
 
PMID:333433
Line 244: Line 246:
 
CHEBI:35581 indole
 
CHEBI:35581 indole
 
|
 
|
−
Temporal assay
+
 
|-  
 
|-  
 
|
 
|
Line 266: Line 268:
 
*medium:leucine
 
*medium:leucine
 
|
 
|
−
ECO:0000181
+
ECO:0005608
 
|
 
|
−
in vitro assay evidence
+
tumble frequency assay evidence
 
|
 
|
 
PMID:333433
 
PMID:333433
Line 274: Line 276:
 
CHEBI:15603 leucine
 
CHEBI:15603 leucine
 
|
 
|
−
Temporal assay
+
 
|-  
 
|-  
 
|
 
|
Line 296: Line 298:
 
*medium:chemotaxis medium
 
*medium:chemotaxis medium
 
|
 
|
−
ECO:0000181
+
ECO:0005608
 
|
 
|
−
in vitro assay evidence
+
tumble frequency assay evidence
 
|
 
|
 
PMID:333433
 
PMID:333433
 
|
 
|
−
 
+
CHEBI:17053 aspartate
 
|
 
|
−
Temporal assay
+
 
|-  
 
|-  
 
|
 
|
Line 326: Line 328:
 
*medium:maltose
 
*medium:maltose
 
|
 
|
−
ECO:0000181
+
ECO:0005608
 
|
 
|
−
in vitro assay evidence
+
tumble frequency assay evidence
 
|
 
|
 
PMID:333433
 
PMID:333433
Line 334: Line 336:
 
CHEBI:17306 maltose
 
CHEBI:17306 maltose
 
|
 
|
−
Temporal assay
+
 
|-  
 
|-  
 
|
 
|
Line 356: Line 358:
 
*medium:galactose
 
*medium:galactose
 
|
 
|
−
ECO:0000181
+
ECO:0005609
 
|
 
|
−
in vitro assay evidence
+
capillary assay evidence
 
|
 
|
 
PMID:333433
 
PMID:333433
Line 364: Line 366:
 
CHEBI:28260 galactose
 
CHEBI:28260 galactose
 
|
 
|
−
Capillary assay
+
 
|-  
 
|-  
 
|
 
|
Line 386: Line 388:
 
*medium:ribose
 
*medium:ribose
 
|
 
|
−
ECO:0000181
+
ECO:0005609
 
|
 
|
−
in vitro assay evidence
+
capillary assay evidence
 
|
 
|
 
PMID:333433
 
PMID:333433
Line 394: Line 396:
 
CHEBI:33942 ribose
 
CHEBI:33942 ribose
 
|
 
|
−
Capillary assay
+
 
|-  
 
|-  
 
|
 
|
Line 416: Line 418:
 
*medium:chemotaxis medium
 
*medium:chemotaxis medium
 
|
 
|
−
ECO:0000181
+
ECO:0005608
 
|
 
|
−
in vitro assay evidence
+
tumble frequency assay evidence
 
|
 
|
 
PMID:333433
 
PMID:333433
Line 424: Line 426:
  
 
|
 
|
−
Temporal assay
+
 
|-  
 
|-  
 
|
 
|
Line 446: Line 448:
 
*medium:chemotaxis medium
 
*medium:chemotaxis medium
 
|
 
|
−
ECO:0000181
+
ECO:0005608
 
|
 
|
−
in vitro assay evidence
+
tumble frequency assay evidence
 
|
 
|
 
PMID:333433
 
PMID:333433
Line 454: Line 456:
 
CHEBI:48828 Co(II)
 
CHEBI:48828 Co(II)
 
|
 
|
−
Temporal assay
+
 
|-  
 
|-  
 
|
 
|
Line 476: Line 478:
 
*medium:serine
 
*medium:serine
 
|
 
|
−
ECO:0000181
+
ECO:0007187
 
|
 
|
−
in vitro assay evidence
+
tumble frequency assay evidence used in manual assertion
 
|
 
|
 
PMID:333433
 
PMID:333433
Line 484: Line 486:
 
CHEBI:17115 serine
 
CHEBI:17115 serine
 
|
 
|
−
Temporal assay  
+
 +
|-
 +
|
 +
OMP_AN:494
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:492
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:alanine
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:4562400
 +
|
 +
CHEBI:16977 alanine
 +
|
 +
Threshold for response increased
 +
|-
 +
|
 +
OMP_AN:495
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:488
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:asparagine
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:4562400
 +
|
 +
CEHBI:17196 asparagine
 +
|
 +
Threshold for response increased
 +
|-
 +
|
 +
OMP_AN:496
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:489
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:cysteine
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:4562400
 +
|
 +
CHEBI:17561 cysteine
 +
|
 +
Threshold for response increased
 +
|-
 +
|
 +
OMP_AN:497
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:491
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:glycine
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:4562400
 +
|
 +
 
 +
|
 +
Threshold for response increased
 +
|-
 +
|
 +
OMP_AN:498
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:486
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:serine
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:4562400
 +
|
 +
CHEBI:17715 serine
 +
|
 +
Threshold for response increased
 +
|-
 +
|
 +
OMP_AN:499
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:487
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:threonine
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:4562400
 +
|
 +
CHEBI:16857 threonine
 +
|
 +
Threshold for response incresased
 +
|-
 +
|
 +
OMP_AN:500
 +
|
 +
 
 +
|
 +
OMP:0007053
 +
|
 +
increased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:493
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:methionine
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:4562400
 +
|
 +
CHEBI:16643 methionine
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:562
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:543
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:L-serine
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:6350273
 +
|
 +
CHEBI:17115 L-serine
 +
|
 +
Synthetic amino acid
 +
|-
 +
|
 +
OMP_AN:563
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:547
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:glycine
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:6350273
 +
|
 +
CHEBI:15428 glycine
 +
|
 +
Synthetic amino acid
 +
|-
 +
|
 +
OMP_AN:564
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:550
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:L-threonine
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:6350273
 +
|
 +
CHEBI:16857 L-threonine
 +
|
 +
Synthetic amino acid
 +
|-
 +
|
 +
OMP_AN:565
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:551
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:L-proline
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:6350273
 +
|
 +
CHEBI:17203 L-proline
 +
|
 +
Synthetic amino acid
 +
|-
 +
|
 +
OMP_AN:566
 +
|
 +
 
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:553
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:L-histidine
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:6350273
 +
|
 +
CHEBI:15971 L-histidine
 +
|
 +
Synthetic amino acid
 +
|-
 +
|
 +
OMP_AN:567
 +
|
 +
 
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:554
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:L-isoleucine
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:6350273
 +
|
 +
CHEBI:17191 L-isoleucine
 +
|
 +
Synthetic amino acid
 +
|-
 +
|
 +
OMP_AN:568
 +
|
 +
 
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:555
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:L-leucine
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:6350273
 +
|
 +
CHEBI:15603 L-leucine
 +
|
 +
Synthetic amino acid
 +
|-
 +
|
 +
OMP_AN:569
 +
|
 +
 
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:557
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:L-tryptophan
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:6350273
 +
|
 +
CHEBI:16828 L-tryptophan
 +
|
 +
Synthetic amino acid
 +
|-
 +
|
 +
OMP_AN:585
 +
|
 +
 
 +
|
 +
OMP:0000054
 +
|
 +
absence of positive chemotaxis
 +
|
 +
Relative to: OMP_AN:573
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:LiCl
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
CHEBI:48607 LiCl
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:586
 +
|
 +
 
 +
|
 +
OMP:0000054
 +
|
 +
absence of positive chemotaxis
 +
|
 +
Relative to: OMP_AN:578
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:MgCl2
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
CHEBI:6636 MgCl2
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:587
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:572
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:NH4Cl
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
CHEBI:31206 NH4Cl
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:588
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:576
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:RbCl
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
 
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:589
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:577
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:CsCl
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
 
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:590
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:582
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:NaF
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
CHEBI:28741 NaF
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:591
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:574
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:NaCl
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
CHEBI:26710 NaCl
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:592
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:584
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:NaBr
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
CHEBI:63004 NaBr
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:593
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:583
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:NaI
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
CHEBI:33167 NaI
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:594
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:575
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:KCl
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
CHEBI:32588 KCl
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:595
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:580
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:BaCl2
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
CHEBI:63317 BaCl2
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:596
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:581
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:CaCl2
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
CHEBI:3312 CaCl2
 +
|
 +
Salt chemotaxis
 +
 +
|-
 +
|
 +
OMP_AN:589
 +
|
 +
 
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:577
 +
 
 +
<hr>Genotype differences:<br>
 +
+tsr-1
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:CsCl
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:2682648
 +
|
 +
 
 +
|
 +
Salt chemotaxis
 +
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  
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+
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−
[[Category:Strain:Escherichia coli K-12 AW405]]
+
[[Category:Derivatives of Escherichia coli K-12 AW405]]

Latest revision as of 01:15, 13 September 2018

Strain Summary

Strain Name

AW518

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

Lambda- araC14 fhuA31 galK2(Oc) galT22 glnX44(AS) hisG4(Oc) lacY1 leuB6(Am) mgl-51 mtl-1 rfbC1 rpsL136(StrR) thiE1 thr-1 tsr-1 tsx-78 xylA5

Strain Reference

PMID:4884810[1]

Strain availability
Ancestry

parent:OMP ST:772 ! Escherichia coli K-12 AW405

Annotated phenotypes


edit table

Notes

AW405 is a derivative of AW330. The his-4 allele was introduced from strain AT1372[2] by transduction with P1, followed by penicillin selection.[2]

The tsr mutation in AW518 was named tsr-1 in Hedblom and Adler[3].

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:47

OMP:0000005

presence of cell motility

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:35C
  • medium:semi-solid tryptone agar
 ECO:0000181

in vitro assay evidence

PMID:4916925[4]

OMP_AN:48

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:45

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:35C
  • medium:semi-solid tryptone agar
 ECO:0000181

in vitro assay evidence

PMID:4916925[4]

OMP_AN:49

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:46

Genotype differences:

+tsr-1

Condition differences:

medium:buffer + serine (CHEBIbuffer;serine (CHEBI

medium:buffer + serine (CHEBI:17115)

ECO:0000181

in vitro assay evidence

PMID:4916925[4]

OMP_AN:341

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:403

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:acetate
  • medium:chemotaxis medium
 ECO:0007187

tumble frequency assay evidence used in manual assertion

PMID:333433[5]

CHEBI:30089 acetate

OMP_AN:342

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:404

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:benzoate
  • medium:chemotaxis medium
 ECO:0005608

tumble frequency assay evidence

PMID:333433[5]

CHEBI:16150 benzoate

OMP_AN:343

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:405

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:indole
 ECO:0005608

tumble frequency assay evidence

PMID:333433[5]

CHEBI:35581 indole

OMP_AN:344

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:406

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:leucine
 ECO:0005608

tumble frequency assay evidence

PMID:333433[5]

CHEBI:15603 leucine

OMP_AN:345

OMP:0007053

increased positive chemotaxis

Relative to: OMP_AN:105

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:aspartate
  • medium:chemotaxis medium
 ECO:0005608

tumble frequency assay evidence

PMID:333433[5]

CHEBI:17053 aspartate

OMP_AN:346

OMP:0007053

increased positive chemotaxis

Relative to: OMP_AN:102

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:maltose
 ECO:0005608

tumble frequency assay evidence

PMID:333433[5]

CHEBI:17306 maltose

OMP_AN:347

OMP:0007053

increased positive chemotaxis

Relative to: OMP_AN:401

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:galactose
 ECO:0005609

capillary assay evidence

PMID:333433[5]

CHEBI:28260 galactose

OMP_AN:348

OMP:0007053

increased positive chemotaxis

Relative to: OMP_AN:402

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:ribose
 ECO:0005609

capillary assay evidence

PMID:333433[5]

CHEBI:33942 ribose

OMP_AN:349

OMP:0007054

increased negative chemotaxis

Relative to: OMP_AN:407

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:Ni(II)
  • medium:chemotaxis medium
 ECO:0005608

tumble frequency assay evidence

PMID:333433[5]

OMP_AN:350

OMP:0007054

increased negative chemotaxis

Relative to: OMP_AN:408

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:Co(II)
  • medium:chemotaxis medium
 ECO:0005608

tumble frequency assay evidence

PMID:333433[5]

CHEBI:48828 Co(II)

OMP_AN:422

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:421

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:serine
 ECO:0007187

tumble frequency assay evidence used in manual assertion

PMID:333433[5]

CHEBI:17115 serine

OMP_AN:494

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:492

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:alanine
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:4562400[6]

CHEBI:16977 alanine

Threshold for response increased

OMP_AN:495

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:488

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:asparagine
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:4562400[6]

CEHBI:17196 asparagine

Threshold for response increased

OMP_AN:496

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:489

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:cysteine
 ECO:0005609

capillary assay evidence

PMID:4562400[6]

CHEBI:17561 cysteine

Threshold for response increased

OMP_AN:497

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:491

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:glycine
 ECO:0005609

capillary assay evidence

PMID:4562400[6]

Threshold for response increased

OMP_AN:498

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:486

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:serine
 ECO:0005609

capillary assay evidence

PMID:4562400[6]

CHEBI:17715 serine

Threshold for response increased

OMP_AN:499

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:487

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:threonine
 ECO:0005609

capillary assay evidence

PMID:4562400[6]

CHEBI:16857 threonine

Threshold for response incresased

OMP_AN:500

OMP:0007053

increased positive chemotaxis

Relative to: OMP_AN:493

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:methionine
 ECO:0005609

capillary assay evidence

PMID:4562400[6]

CHEBI:16643 methionine

OMP_AN:562

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:543

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:L-serine
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:6350273[7]

CHEBI:17115 L-serine

Synthetic amino acid

OMP_AN:563

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:547

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:glycine
 ECO:0005609

capillary assay evidence

PMID:6350273[7]

CHEBI:15428 glycine

Synthetic amino acid

OMP_AN:564

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:550

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:L-threonine
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:6350273[7]

CHEBI:16857 L-threonine

Synthetic amino acid

OMP_AN:565

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:551

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:L-proline
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:6350273[7]

CHEBI:17203 L-proline

Synthetic amino acid

OMP_AN:566

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:553

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:L-histidine
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:6350273[7]

CHEBI:15971 L-histidine

Synthetic amino acid

OMP_AN:567

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:554

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:L-isoleucine
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:6350273[7]

CHEBI:17191 L-isoleucine

Synthetic amino acid

OMP_AN:568

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:555

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:L-leucine
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:6350273[7]

CHEBI:15603 L-leucine

Synthetic amino acid

OMP_AN:569

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:557

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:L-tryptophan
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:6350273[7]

CHEBI:16828 L-tryptophan

Synthetic amino acid

OMP_AN:585

OMP:0000054

absence of positive chemotaxis

Relative to: OMP_AN:573

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:LiCl
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

CHEBI:48607 LiCl

Salt chemotaxis

OMP_AN:586

OMP:0000054

absence of positive chemotaxis

Relative to: OMP_AN:578

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:MgCl2
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

CHEBI:6636 MgCl2

Salt chemotaxis

OMP_AN:587

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:572

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:NH4Cl
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

CHEBI:31206 NH4Cl

Salt chemotaxis

OMP_AN:588

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:576

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:RbCl
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

Salt chemotaxis

OMP_AN:589

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:577

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:CsCl
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

Salt chemotaxis

OMP_AN:590

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:582

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:NaF
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

CHEBI:28741 NaF

Salt chemotaxis

OMP_AN:591

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:574

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:NaCl
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

CHEBI:26710 NaCl

Salt chemotaxis

OMP_AN:592

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:584

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:NaBr
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

CHEBI:63004 NaBr

Salt chemotaxis

OMP_AN:593

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:583

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:NaI
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

CHEBI:33167 NaI

Salt chemotaxis

OMP_AN:594

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:575

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:KCl
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

CHEBI:32588 KCl

Salt chemotaxis

OMP_AN:595

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:580

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:BaCl2
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

CHEBI:63317 BaCl2

Salt chemotaxis

OMP_AN:596

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:581

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:CaCl2
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

CHEBI:3312 CaCl2

Salt chemotaxis

OMP_AN:589

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:577

Genotype differences:

+tsr-1

Condition differences:

no differences

  • temperature:30C
  • medium:CsCl
  • medium:chemotaxis medium
 ECO:0005609

capillary assay evidence

PMID:2682648[8]

Salt chemotaxis


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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Armstrong, JB & Adler, J (1969) Location of genes for motility and chemotaxis on the Escherichia coli genetic map. J. Bacteriol. 97 156-61 PubMed OMPwiki page
  2. ↑ Armstrong, JB & Adler, J (1967) Genetics of motility in Escherichia coli: complementation of paralysed mutants. Genetics 56 363-73 PubMed OMPwiki page
  3. ↑ Hiatt, RA et al. (1978) Limitations of the intradermal test for schistosomiasis mansoni: experience from epidemiologic studies in a Puerto Rican community. Am. J. Trop. Med. Hyg. 27 535-41 PubMed OMPwiki page
  4. ↑ 4.0 4.1 4.2 Hazelbauer, GL et al. (1969) Escherichia coli mutants defective in chemotaxis toward specific chemicals. Proc. Natl. Acad. Sci. U.S.A. 64 1300-7 PubMed OMPwiki page
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 Springer, MS et al. (1977) Sensory transduction in Escherichia coli: two complementary pathways of information processing that involve methylated proteins. Proc. Natl. Acad. Sci. U.S.A. 74 3312-6 PubMed OMPwiki page
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 Mesibov, R & Adler, J (1972) Chemotaxis toward amino acids in Escherichia coli. J. Bacteriol. 112 315-26 PubMed OMPwiki page
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 Hedblom, ML & Adler, J (1983) Chemotactic response of Escherichia coli to chemically synthesized amino acids. J. Bacteriol. 155 1463-6 PubMed OMPwiki page
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 Qi, YL & Adler, J (1989) Salt taxis in Escherichia coli bacteria and its lack in mutants. Proc. Natl. Acad. Sci. U.S.A. 86 8358-62 PubMed OMPwiki page
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