Difference between revisions of "OMP ST:772 ! Escherichia coli K-12 AW405"
Kcunningham (talk | contribs) (Table edited by Kcunningham via TableEdit) |
(Table edited by $2 via TableEdit) |
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*Pangenome: Escherichia coli | *Pangenome: Escherichia coli | ||
*Subspecies and/or strain: Taxon: K-12 | *Subspecies and/or strain: Taxon: K-12 | ||
| − | *NCBI Taxonomy | + | *NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333] |
|- | |- | ||
!align=left align='left' bgcolor='#CCCCFF' |Genotype | !align=left align='left' bgcolor='#CCCCFF' |Genotype | ||
| Line 32: | Line 32: | ||
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference | !align=left align='left' bgcolor='#CCCCFF' |Strain Reference | ||
|| | || | ||
| − | PMID:4861166 | + | *other:[http://cgsc.biology.yale.edu/Strain.php?ID=15962 Coli Genetics Stock Center AW405] |
| + | *PMID:4861166 | ||
|- | |- | ||
!align=left align='left' bgcolor='#CCCCFF' |Strain availability | !align=left align='left' bgcolor='#CCCCFF' |Strain availability | ||
| Line 40: | Line 41: | ||
!align=left align='left' bgcolor='#CCCCFF' |Ancestry | !align=left align='left' bgcolor='#CCCCFF' |Ancestry | ||
|| | || | ||
| − | parent:AW330 | + | parent:[[OMP ST:179 ! Escherichia coli K-12 AW330]] |
|- | |- | ||
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes | !align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes | ||
| Line 47: | Line 48: | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
| − | |<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.5933.U556e25d551af2&page= | + | |<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.5933.U556e25d551af2&page=6972&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> || |
|} | |} | ||
<noinclude> | <noinclude> | ||
| − | <!-- OMP category tags -->[[Category: | + | <!-- OMP category tags -->[[Category:OMP ST:179 ! Escherichia coli K-12 AW330 derivatives]] |
</noinclude> | </noinclude> | ||
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.5933.U556e25d551af2--></protect> | <!--box uid=d41d8cd98f00b204e9800998ecf8427e.5933.U556e25d551af2--></protect> | ||
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****************************************************************************************** | ****************************************************************************************** | ||
* | * | ||
| − | + | ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | |
* | * | ||
****************************************************************************************** --> | ****************************************************************************************** --> | ||
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="P556e25d55f04b" class=" tableEdit OMP_annotation_table dataTable" | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="P556e25d55f04b" class=" tableEdit OMP_annotation_table dataTable" | ||
|- align='left' bgcolor='#CCCCFF' | |- align='left' bgcolor='#CCCCFF' | ||
| − | !|Annotation ID!! | + | !|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes |
|- | |- | ||
| | | | ||
| Line 149: | Line 150: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:4916925 | PMID:4916925 | ||
| Line 179: | Line 180: | ||
ECO:0005608 | ECO:0005608 | ||
| | | | ||
| − | + | tumble frequency assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 209: | Line 210: | ||
ECO:0005608 | ECO:0005608 | ||
| | | | ||
| − | + | tumble frequency assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 239: | Line 240: | ||
ECO:0005608 | ECO:0005608 | ||
| | | | ||
| − | + | tumble frequency assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 269: | Line 270: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 299: | Line 300: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 329: | Line 330: | ||
ECO:0005608 | ECO:0005608 | ||
| | | | ||
| − | + | tumble frequency assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 359: | Line 360: | ||
ECO:0005608 | ECO:0005608 | ||
| | | | ||
| − | + | tumble frequency assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 389: | Line 390: | ||
ECO:0005608 | ECO:0005608 | ||
| | | | ||
| − | + | tumble frequency assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 419: | Line 420: | ||
ECO:0005608 | ECO:0005608 | ||
| | | | ||
| − | + | tumble frequency assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 449: | Line 450: | ||
ECO:0005608 | ECO:0005608 | ||
| | | | ||
| − | + | tumble frequency assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 479: | Line 480: | ||
ECO:0005608 | ECO:0005608 | ||
| | | | ||
| − | + | tumble frequency assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 509: | Line 510: | ||
ECO:0005608 | ECO:0005608 | ||
| | | | ||
| − | + | tumble frequency assay evidence | |
| | | | ||
PMID:333433 | PMID:333433 | ||
| Line 539: | Line 540: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:4562400 | PMID:4562400 | ||
| Line 569: | Line 570: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:4562400 | PMID:4562400 | ||
| Line 599: | Line 600: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:4562400 | PMID:4562400 | ||
| Line 629: | Line 630: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:4562400 | PMID:4562400 | ||
| Line 659: | Line 660: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:4562400 | PMID:4562400 | ||
| Line 689: | Line 690: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:4562400 | PMID:4562400 | ||
| Line 719: | Line 720: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:4562400 | PMID:4562400 | ||
| | | | ||
| − | + | CHEBI:15428 glycine | |
| | | | ||
| Line 749: | Line 750: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:4562400 | PMID:4562400 | ||
| Line 779: | Line 780: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:4562400 | PMID:4562400 | ||
| Line 810: | Line 811: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8444785 | PMID:8444785 | ||
| Line 842: | Line 843: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8444785 | PMID:8444785 | ||
| Line 874: | Line 875: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8444785 | PMID:8444785 | ||
| Line 906: | Line 907: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8444785 | PMID:8444785 | ||
| Line 939: | Line 940: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8444785 | PMID:8444785 | ||
| Line 973: | Line 974: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8444785 | PMID:8444785 | ||
| Line 1,004: | Line 1,005: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,034: | Line 1,035: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| | | | ||
| − | CHEBI:34018 | + | CHEBI:34018 S-AMPA |
| − | S-AMPA | ||
| | | | ||
| Line 1,065: | Line 1,065: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,095: | Line 1,095: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,125: | Line 1,125: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,155: | Line 1,155: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,185: | Line 1,185: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,215: | Line 1,215: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,245: | Line 1,245: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,275: | Line 1,275: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,306: | Line 1,306: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,336: | Line 1,336: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,366: | Line 1,366: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,396: | Line 1,396: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,426: | Line 1,426: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:8590457 | PMID:8590457 | ||
| Line 1,456: | Line 1,456: | ||
ECO:0005607 | ECO:0005607 | ||
| | | | ||
| − | + | tethered cell assay evidence | |
| | | | ||
PMID:3025180 | PMID:3025180 | ||
| Line 1,462: | Line 1,462: | ||
CHEBI:15882 phenol | CHEBI:15882 phenol | ||
| | | | ||
| − | + | Need to check phenotype | |
|- | |- | ||
| | | | ||
| Line 1,486: | Line 1,486: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,516: | Line 1,516: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,546: | Line 1,546: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,576: | Line 1,576: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,696: | Line 1,696: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,726: | Line 1,726: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,756: | Line 1,756: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,786: | Line 1,786: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,816: | Line 1,816: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,846: | Line 1,846: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,876: | Line 1,876: | ||
ECO:0005609 | ECO:0005609 | ||
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,904: | Line 1,904: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,912: | Line 1,912: | ||
CHEBI:17295 L-phenylalanine | CHEBI:17295 L-phenylalanine | ||
| | | | ||
| − | |||
Synthetic amino acid | Synthetic amino acid | ||
|- | |- | ||
| Line 1,935: | Line 1,934: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,943: | Line 1,942: | ||
CHEBI:16828 L-tryptophan | CHEBI:16828 L-tryptophan | ||
| | | | ||
| − | |||
Synthetic amino acid | Synthetic amino acid | ||
|- | |- | ||
| Line 1,966: | Line 1,964: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 1,974: | Line 1,972: | ||
CHEBI:16414 L-valine | CHEBI:16414 L-valine | ||
| | | | ||
| − | |||
Synthetic amino acid | Synthetic amino acid | ||
|- | |- | ||
| Line 1,997: | Line 1,994: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 2,005: | Line 2,002: | ||
CHEBI:16467 L-arginine | CHEBI:16467 L-arginine | ||
| | | | ||
| − | |||
Synthetic amino acid | Synthetic amino acid | ||
|- | |- | ||
| Line 2,028: | Line 2,024: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 2,036: | Line 2,032: | ||
CHEBI:18019 L-lysine | CHEBI:18019 L-lysine | ||
| | | | ||
| − | |||
Synthetic amino acid | Synthetic amino acid | ||
|- | |- | ||
| Line 2,059: | Line 2,054: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:6350273 | PMID:6350273 | ||
| Line 2,067: | Line 2,062: | ||
CHEBI:17895 L-tyrosine | CHEBI:17895 L-tyrosine | ||
| | | | ||
| − | |||
Synthetic amino acid | Synthetic amino acid | ||
|- | |- | ||
| Line 2,090: | Line 2,084: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,099: | Line 2,093: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,121: | Line 2,115: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,130: | Line 2,124: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,152: | Line 2,146: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,161: | Line 2,155: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,183: | Line 2,177: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,192: | Line 2,186: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,214: | Line 2,208: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,223: | Line 2,217: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,245: | Line 2,239: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,254: | Line 2,248: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,276: | Line 2,270: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,285: | Line 2,279: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,307: | Line 2,301: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,316: | Line 2,310: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,338: | Line 2,332: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,347: | Line 2,341: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,369: | Line 2,363: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,378: | Line 2,372: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,400: | Line 2,394: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,409: | Line 2,403: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,431: | Line 2,425: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,440: | Line 2,434: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,462: | Line 2,456: | ||
*medium:chemotaxis medium | *medium:chemotaxis medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:2682648 | PMID:2682648 | ||
| Line 2,471: | Line 2,465: | ||
| | | | ||
Salt chemotaxis | Salt chemotaxis | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,494: | Line 2,488: | ||
*medium:omega-conotoxin (0 uM) | *medium:omega-conotoxin (0 uM) | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:10940028 | PMID:10940028 | ||
| Line 2,503: | Line 2,497: | ||
CHEBI:90630 omega-conotoxin | CHEBI:90630 omega-conotoxin | ||
| | | | ||
| − | |||
Omega-conotoxin is a Calcium channel blocker | Omega-conotoxin is a Calcium channel blocker | ||
|- | |- | ||
| Line 2,527: | Line 2,520: | ||
*medium:Vogel-Bonner medium | *medium:Vogel-Bonner medium | ||
| | | | ||
| − | ECO: | + | ECO:0005609 |
| | | | ||
| − | + | capillary assay evidence | |
| | | | ||
PMID:10940028 | PMID:10940028 | ||
| Line 2,536: | Line 2,529: | ||
CHEBI:90630 omega-conotoxin | CHEBI:90630 omega-conotoxin | ||
| | | | ||
| − | |||
Omega-contoxin is a Calcium channel blocker | Omega-contoxin is a Calcium channel blocker | ||
|- | |- | ||
| Line 2,559: | Line 2,551: | ||
*medium:motility medium | *medium:motility medium | ||
| | | | ||
| − | ECO: | + | ECO:0005607 |
| | | | ||
| − | + | tethered cell assay evidence | |
| | | | ||
PMID:6339465 | PMID:6339465 | ||
| Line 2,567: | Line 2,559: | ||
CHEBI:17754 glycerol | CHEBI:17754 glycerol | ||
| | | | ||
| − | + | ||
|- | |- | ||
| | | | ||
| Line 2,589: | Line 2,581: | ||
*medium:motility medium | *medium:motility medium | ||
| | | | ||
| − | ECO: | + | ECO:0005607 |
| | | | ||
| − | + | tethered cell assay evidence | |
| | | | ||
PMID:6339465 | PMID:6339465 | ||
| Line 2,597: | Line 2,589: | ||
CHEBI:30742 ethylene glycol | CHEBI:30742 ethylene glycol | ||
| | | | ||
| − | + | ||
| + | |- | ||
| + | | | ||
| + | OMP_AN:644 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | OMP:0000067 | ||
| + | | | ||
| + | presence of motility by swarming | ||
| + | | | ||
| + | Relative to: | ||
| + | |||
| + | <hr>Genotype differences:<br> | ||
| + | Nothing to compare<br/> | ||
| + | <hr>Condition differences:<br> | ||
| + | Nothing to compare<br/> | ||
| + | | | ||
| + | medium:tryptone swarm plate | ||
| + | | | ||
| + | ECO:0007192 | ||
| + | | | ||
| + | motility assay evidence used in manual assertion | ||
| + | | | ||
| + | PMID:8576064 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | Temperature not stated | ||
| + | |- | ||
| + | | | ||
| + | OMP_AN:645 | ||
| + | | | ||
| + | |||
| + | | | ||
| + | OMP:0007096 | ||
| + | | | ||
| + | increased motility by swarming | ||
| + | | | ||
| + | Relative to: OMP_AN:644 | ||
| + | |||
| + | <hr>Genotype differences:<br> | ||
| + | no differences | ||
| + | <hr>Condition differences:<br> | ||
| + | medium:PQQ (50 uM)? | ||
| + | | | ||
| + | *medium:PQQ (50 uM) | ||
| + | *medium:tryptone swarm plate | ||
| + | | | ||
| + | ECO:0007192 | ||
| + | | | ||
| + | motility assay evidence used in manual assertion | ||
| + | | | ||
| + | PMID:8576064 | ||
| + | | | ||
| + | CHEBI:18315 pyrroloquinoline quinone (PQQ) | ||
| + | | | ||
| + | Temperature not stated. PQQ concentration inferred by curator. | ||
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Latest revision as of 15:04, 11 January 2021
Contents
Strain Summary
| Strain Name |
AW405 |
|---|---|
| Synonyms | |
| Taxon Information |
|
| Genotype |
Lambda- araC14 fhuA31 galK2(Oc) galT22 glnX44(AS) hisG4(Oc) lacY1 leuB6(Am) mgl-51 mtl-1 rfbC1 rpsL136(StrR) thiE1 thr-1 tsx-78 xylA5 |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:44 |
OMP:0000005 |
presence of cell motility |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000181 |
in vitro assay evidence |
swim plate assay | |||
|
OMP_AN:45 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000181 |
in vitro assay evidence |
||||
|
OMP_AN:46 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17115 serine |
|||
|
OMP_AN:102 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:17306 maltose |
|||
|
OMP_AN:105 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:17053 aspartate |
|||
|
OMP_AN:400 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005608 |
tumble frequency assay evidence |
||||
|
OMP_AN:401 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:28260 galactose |
|||
|
OMP_AN:402 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:33942 ribose |
|||
|
OMP_AN:403 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:30089 acetate |
|||
|
OMP_AN:404 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:16150 benzoate |
|||
|
OMP_AN:405 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:35581 indole |
|||
|
OMP_AN:406 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:15603 leucine |
|||
|
OMP_AN:407 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005608 |
tumble frequency assay evidence |
||||
|
OMP_AN:408 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:48828 Co(II) |
|||
|
OMP_AN:421 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:17115 serine |
|||
|
OMP_AN:485 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17053 aspartate |
|||
|
OMP_AN:486 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17115 serine |
|||
|
OMP_AN:487 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16857 threonine |
|||
|
OMP_AN:488 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17196 asparagine |
|||
|
OMP_AN:489 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17561 cysteine |
|||
|
OMP_AN:490 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:491 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:15428 glycine |
|||
|
OMP_AN:492 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16977 alanine |
|||
|
OMP_AN:493 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16643 methionine |
|||
|
OMP_AN:504 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17115 serine CHEBI:90630 omega-conotoxin |
Omega-conotoxin is a Calcium channel blocker | ||
|
OMP_AN:505 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17053 aspartate CHEBI:90630 omega-contoxin |
Omega-conotoxin is a Calcium channel blocker | ||
|
OMP_AN:506 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:504 Genotype differences: no differences Condition differences: medium:omega-conotoxin (0.5 uM)omega-conotoxin (0 uM) |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17115 serine CHEBI:90630 omega-conotoxin |
Omega-conotoxin is a Calcium channel blocker | ||
|
OMP_AN:507 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:505 Genotype differences: no differences Condition differences: medium:omega-conotoxin (0.5 uM)omega-conotoxin (0 uM) |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17053 aspartate CHEBI:90630 omega-contoxin |
Omega-conotoxin is a Calcium channel blocker | ||
|
OMP_AN:508 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17115 serine CHEBI: 90630 omega-conotoxin |
Omega-conotoxin is a Calcium channel blocker | ||
|
OMP_AN:509 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:508 Genotype differences: no differences Condition differences: medium:EDTA? |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17115 serine CHEBI:90630 omega-conotoxin |
Omega-conotoxin is a Calcium channel blocker | ||
|
OMP_AN:516 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17364 D-aspartate |
|||
|
OMP_AN:517 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:34018 S-AMPA |
|||
|
OMP_AN:518 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:519 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:520 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:521 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:522 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:526 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:527 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:528 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:21754 N-methyl-L-glutamate |
|||
|
OMP_AN:529 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:530 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:531 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:532 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:533 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
||||
|
OMP_AN:540 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005607 |
tethered cell assay evidence |
CHEBI:15882 phenol |
Need to check phenotype | ||
|
OMP_AN:542 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17053 L-aspartate |
Synthetic amino acid | ||
|
OMP_AN:543 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17115 L-serine |
Synthetic amino acid | ||
|
OMP_AN:544 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
Synthetic amino acid | |||
|
OMP_AN:545 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16977 L-alanine |
Synthetic amino acid | ||
|
OMP_AN:546 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
CHEBI:17196 L-asparagine |
Synthetic amino acid | |||
|
OMP_AN:547 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
CHEBI:15429 glycine |
Synthetic amino acid | |||
|
OMP_AN:548 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
CHEBI:17561 L-cysteine |
Synthetic amino acid | |||
|
OMP_AN:549 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16643 L-methionine |
Synthetic amino acid | ||
|
OMP_AN:550 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16857 L-threonine |
Synthetic amino acid | ||
|
OMP_AN:551 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17203 L-proline |
Synthetic amino acid | ||
|
OMP_AN:552 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:18050 L-glutamine |
Synthetic amino acid | ||
|
OMP_AN:553 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:15971 L-histidine |
Synthetic amino acid | ||
|
OMP_AN:554 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17191 L-isoleucine |
Synthetic amino acid | ||
|
OMP_AN:555 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:15603 L-leucine |
Synthetic amino acid | ||
|
OMP_AN:556 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17295 L-phenylalanine |
Synthetic amino acid | ||
|
OMP_AN:557 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16828 L-tryptophan |
Synthetic amino acid | ||
|
OMP_AN:558 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16414 L-valine |
Synthetic amino acid | ||
|
OMP_AN:559 |
OMP:0000054 |
absence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16467 L-arginine |
Synthetic amino acid | ||
|
OMP_AN:560 |
OMP:0000054 |
absence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:18019 L-lysine |
Synthetic amino acid | ||
|
OMP_AN:561 |
OMP:0000054 |
absence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17895 L-tyrosine |
Synthetic amino acid | ||
|
OMP_AN:572 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:31206 NH4Cl |
Salt chemotaxis | ||
|
OMP_AN:573 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:48607 LiCl |
Salt chemotaxis | ||
|
OMP_AN:574 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:26710 NaCl |
Salt chemotaxis | ||
|
OMP_AN:575 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:32588 KCl |
Salt chemotaxis | ||
|
OMP_AN:576 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
Salt chemotaxis | |||
|
OMP_AN:577 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
Salt chemotaxis | |||
|
OMP_AN:578 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:6636 MgCl2 |
Salt chemotaxis | ||
|
OMP_AN:579 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:36383 SrCl2 |
Salt chemotaxis | ||
|
OMP_AN:580 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:63317 BaCl2 |
Salt chemotaxis | ||
|
OMP_AN:581 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:3312 CaCl2 |
Salt chemotaxis | ||
|
OMP_AN:582 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:28741 NaF |
Salt chemotaxis | ||
|
OMP_AN:583 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:33167 NaI |
Salt chemotaxis | ||
|
OMP_AN:584 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:63004 NaBr |
Salt chemotaxis | ||
|
OMP_AN:623 |
OMP:0000052 |
presence of positive chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17115 L-serine CHEBI:90630 omega-conotoxin |
Omega-conotoxin is a Calcium channel blocker | ||
|
OMP_AN:624 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:623 Genotype differences: no differences Condition differences: medium:>omega-conotoxin (0.2 uM)omega-conotoxin (0 uM) |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17115 L-serine CHEBI:90630 omega-conotoxin |
Omega-contoxin is a Calcium channel blocker | ||
|
OMP_AN:630 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005607 |
tethered cell assay evidence |
CHEBI:17754 glycerol |
|||
|
OMP_AN:631 |
OMP:0000053 |
presence of negative chemotaxis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005607 |
tethered cell assay evidence |
CHEBI:30742 ethylene glycol |
|||
|
OMP_AN:644 |
OMP:0000067 |
presence of motility by swarming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
medium:tryptone swarm plate |
ECO:0007192 |
motility assay evidence used in manual assertion |
Temperature not stated | |||
|
OMP_AN:645 |
OMP:0007096 |
increased motility by swarming |
Relative to: OMP_AN:644 Genotype differences: no differences Condition differences: medium:PQQ (50 uM)? |
|
ECO:0007192 |
motility assay evidence used in manual assertion |
CHEBI:18315 pyrroloquinoline quinone (PQQ) |
Temperature not stated. PQQ concentration inferred by curator. | ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Armstrong, JB & Adler, J (1967) Genetics of motility in Escherichia coli: complementation of paralysed mutants. Genetics 56 363-73 PubMed OMPwiki page
- ↑ 2.0 2.1 Armstrong, JB & Adler, J (1969) Location of genes for motility and chemotaxis on the Escherichia coli genetic map. J. Bacteriol. 97 156-61 PubMed OMPwiki page
- ↑ 3.0 3.1 Hazelbauer, GL et al. (1969) Escherichia coli mutants defective in chemotaxis toward specific chemicals. Proc. Natl. Acad. Sci. U.S.A. 64 1300-7 PubMed OMPwiki page
- ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 Springer, MS et al. (1977) Sensory transduction in Escherichia coli: two complementary pathways of information processing that involve methylated proteins. Proc. Natl. Acad. Sci. U.S.A. 74 3312-6 PubMed OMPwiki page
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 Mesibov, R & Adler, J (1972) Chemotaxis toward amino acids in Escherichia coli. J. Bacteriol. 112 315-26 PubMed OMPwiki page
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 Tisa, LS et al. (1993) Inhibition of Escherichia coli chemotaxis by omega-conotoxin, a calcium ion channel blocker. J. Bacteriol. 175 1235-8 PubMed OMPwiki page
- ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 Lake, EM et al. (1995) Analogue of aspartate and glutamate active at synapses are attractants for Escherichia coli. Cell. Mol. Neurobiol. 15 283-8 PubMed OMPwiki page
- ↑ Imae, Y et al. (1987) Phenol: a complex chemoeffector in bacterial chemotaxis. J. Bacteriol. 169 371-9 PubMed OMPwiki page
- ↑ 9.00 9.01 9.02 9.03 9.04 9.05 9.06 9.07 9.08 9.09 9.10 9.11 9.12 9.13 9.14 9.15 9.16 9.17 9.18 9.19 Hedblom, ML & Adler, J (1983) Chemotactic response of Escherichia coli to chemically synthesized amino acids. J. Bacteriol. 155 1463-6 PubMed OMPwiki page
- ↑ 10.00 10.01 10.02 10.03 10.04 10.05 10.06 10.07 10.08 10.09 10.10 10.11 10.12 Qi, YL & Adler, J (1989) Salt taxis in Escherichia coli bacteria and its lack in mutants. Proc. Natl. Acad. Sci. U.S.A. 86 8358-62 PubMed OMPwiki page
- ↑ 11.0 11.1 Tisa, LS et al. (2000) Effects of organic antagonists of Ca(2+), Na(+), and K(+) on chemotaxis and motility of escherichia coli. J. Bacteriol. 182 4856-61 PubMed OMPwiki page
- ↑ 12.0 12.1 Oosawa, K & Imae, Y (1983) Glycerol and ethylene glycol: members of a new class of repellents of Escherichia coli chemotaxis. J. Bacteriol. 154 104-12 PubMed OMPwiki page
- ↑ 13.0 13.1 de Jonge, R et al. (1996) Pyrroloquinoline quinone, a chemotactic attractant for Escherichia coli. J. Bacteriol. 178 1224-6 PubMed OMPwiki page
e
o
- OMP:0000005 ! presence of motility
- OMP:0000052 ! presence of positive chemotaxis
- OMP:0000053 ! presence of negative chemotaxis
- OMP:0000054 ! absence of positive chemotaxis
- OMP:0000067 ! presence of motility by swarming
- OMP:0007041 ! decreased positive chemotaxis
- OMP:0007096 ! increased motility by swarming
- OMP ST:179 ! Escherichia coli K-12 AW330 derivatives
