Difference between revisions of "OMP ST:73961 ! Escherichia coli K-12 JW4286"

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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 
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Escherichia coli K-12 JW4286
 
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
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JW4286-1
 
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
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*Pangenome: Escherichia coli
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*Subspecies and/or strain: K-12
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*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
 
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
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DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 uxuB720(del)::FRT-kan-FRT
 
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
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*PMID:16738554
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*[http://cgsc2.biology.yale.edu/Strain.php?ID=109352 Coli Genetic Stock Center]
 
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[http://cgsc2.biology.yale.edu/Strain.php?ID=109352 Coli Genetic Stock Center]
 
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 
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parent: [[OMP ST:800 ! Escherichia coli K-12 BW25113]]
 
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:35439
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OMP:0007902
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increased resistance to bile acids
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Relative to: OMP_AN:27585
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<hr>Genotype differences:<br>
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+lacZ4787(del)( +uxuB720(del)  -lacZ4787(del)
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<hr>Condition differences:<br>
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no differences
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*temperature:37C
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*medium:LB agar
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*medium:Cholate sodium hydrate
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CID:23679061) Cholate sodium hydrate
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*chemical concentration=  0.5 %
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*normalized fitness= 3.6
  
 
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Latest revision as of 02:22, 23 October 2019

Strain Summary

Strain Name

Escherichia coli K-12 JW4286

Synonyms

JW4286-1

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 uxuB720(del)::FRT-kan-FRT

Strain Reference
Strain availability

Coli Genetic Stock Center

Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes


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Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:35439

OMP:0007902

increased resistance to bile acids

Relative to: OMP_AN:27585

Genotype differences:

+lacZ4787(del)( +uxuB720(del) -lacZ4787(del)

Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Cholate sodium hydrate
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards some (CID:23679061) Cholate sodium hydrate

  • chemical concentration= 0.5 %
  • normalized fitness= 3.6
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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page
  2. ↑ Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
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