OMP ST:73875 ! Escherichia coli K-12 JW4135
Contents
Strain Summary
| Strain Name |
Escherichia coli K-12 JW4135 |
|---|---|
| Synonyms |
JW4135-2 |
| Taxon Information |
|
| Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 purA727(del)::FRT-kan-FRT |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:35177 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27601 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32954) Sodium Acetate anhydrous |
| ||
|
OMP_AN:35178 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27611 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32954) Sodium Acetate anhydrous |
| ||
|
OMP_AN:35179 |
OMP:0006058 |
increased resistance to aminoglycoside |
Relative to: OMP_AN:27525 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:2638) Amikacin sulfate salt (disulfate) |
| ||
|
OMP_AN:35180 |
OMP:0006037 |
increased resistance to macrolide |
Relative to: OMP_AN:27518 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:2955) Azithromycin |
| ||
|
OMP_AN:35181 |
OMP:0007895 |
increased resistance to a surfactant |
Relative to: OMP_AN:27581 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3020) Benzalkonium chloride |
| ||
|
OMP_AN:35182 |
OMP:0007903 |
decreased resistance to bile acids |
Relative to: OMP_AN:27587 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177) |
| ||
|
OMP_AN:35183 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27514 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:3649) Chlorpromazine hydrochloride |
| ||
|
OMP_AN:35184 |
OMP:0007886 |
decreased resistance to a metal |
Relative to: OMP_AN:27579 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate |
| ||
|
OMP_AN:35185 |
OMP:0007903 |
decreased resistance to bile acids |
Relative to: OMP_AN:27586 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9177) Deoxycholate sodium |
| ||
|
OMP_AN:35186 |
OMP:0007912 |
decreased resistance to a chelator |
Relative to: OMP_AN:27507 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:64758) EDTA disodium salt dihydrate |
| ||
|
OMP_AN:35187 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27572 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:4806) Epigallocatechin gallate (EGCG) |
| ||
|
OMP_AN:35188 |
OMP:0006036 |
decreased resistance to macrolide |
Relative to: OMP_AN:27520 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42355) Erythromycin |
| ||
|
OMP_AN:35189 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27606 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:506227) N-Acetyl-D-glucosamine |
| ||
|
OMP_AN:35190 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27616 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:506227) N-Acetyl-D-glucosamine |
| ||
|
OMP_AN:35191 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27602 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:91431) D-(+) Glucosamine hydrochloride |
| ||
|
OMP_AN:35192 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27612 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:91431) D-(+) Glucosamine hydrochloride |
| ||
|
OMP_AN:35193 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27603 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
| ||
|
OMP_AN:35194 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27613 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
| ||
|
OMP_AN:35195 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27604 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
|
OMP_AN:35196 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27614 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:17754) Glycerol |
| ||
|
OMP_AN:35197 |
OMP:0007878 |
increased resistance to an antimicrobial agent |
Relative to: OMP_AN:27545 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:6030) Isoniazid |
| ||
|
OMP_AN:35198 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27605 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23615261) D-(+) Maltose monohydrate |
| ||
|
OMP_AN:35199 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27615 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:23615261) D-(+) Maltose monohydrate |
| ||
|
OMP_AN:35200 |
OMP:0006044 |
decreased resistance to beta-lactam |
Relative to: OMP_AN:27537 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:51208) Mecillinam |
| ||
|
OMP_AN:35201 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27600 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl |
| ||
|
OMP_AN:35202 |
OMP:0007032 |
decreased utilization of inorganic nitrogen source |
Relative to: OMP_AN:27610 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31206) NH4Cl |
| ||
|
OMP_AN:35203 |
OMP:0007878 |
increased resistance to an antimicrobial agent |
Relative to: OMP_AN:27503 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:71415) Nitrofurantoin |
| ||
|
OMP_AN:35204 |
OMP:0007250 |
increased resistance to a chemical |
Relative to: OMP_AN:27593 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:18357) (-)-Norepinephrine |
| ||
|
OMP_AN:35205 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27573 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8431) Procaine hydrochloride |
| ||
|
OMP_AN:35206 |
OMP:0007878 |
increased resistance to an antimicrobial agent |
Relative to: OMP_AN:27553 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8642) Puromycin dihydrochloride |
| ||
|
OMP_AN:35207 |
OMP:0006041 |
increased resistance to quinolone |
Relative to: OMP_AN:27543 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9287) Streptonigrin |
| ||
|
OMP_AN:35208 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27607 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:15741) Succinic acid |
| ||
|
OMP_AN:35209 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27617 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:15741) Succinic acid |
| ||
|
OMP_AN:35210 |
OMP:0007878 |
increased resistance to an antimicrobial agent |
Relative to: OMP_AN:27516 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:445629) Thiolactomycin |
| ||
|
OMP_AN:35211 |
OMP:0006057 |
decreased resistance to aminoglycoside |
Relative to: OMP_AN:27529 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:28864) Tobramycin |
| ||
|
OMP_AN:35212 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27566 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:9932) Vancomycin HCl hydrate |
| ||
|
OMP_AN:35213 |
OMP:0007249 |
decreased resistance to a chemical |
Relative to: OMP_AN:27568 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:53188) (±)-Verapamil hydrochloride |
| ||
|
OMP_AN:35214 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27560 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CID:16219032) Bacitracin Zinc Sulfate |
| ||
|
OMP_AN:35215 |
OMP:0007912 |
decreased resistance to a chelator |
Relative to: OMP_AN:27508 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:30740) EGTA |
| ||
|
OMP_AN:35216 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27598 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride |
| ||
|
OMP_AN:35217 |
OMP:0007886 |
decreased resistance to a metal |
Relative to: OMP_AN:27608 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride |
| ||
|
OMP_AN:35218 |
OMP:0007075 |
decreased growth factor requirement |
Relative to: OMP_AN:27599 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O |
| ||
|
OMP_AN:35219 |
OMP:0007937 |
decreased resistance to nutrient limitation |
Relative to: OMP_AN:27609 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O |
| ||
|
OMP_AN:35220 |
OMP:0007521 |
decreased population growth in high osmolarity |
Relative to: OMP_AN:27595 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:26710) NaCl |
| ||
|
OMP_AN:35221 |
OMP:0006045 |
increased resistance to beta-lactam compound |
Relative to: OMP_AN:27538 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:52134) Oxacillin sodium salt |
| ||
|
OMP_AN:35222 |
OMP:0007878 |
increased resistance to an antimicrobial agent |
Relative to: OMP_AN:27565 Genotype differences: +lacZ4787(del)( +purA727(del) -lacZ4787(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:8310) Polymyxin B sulfate |
| ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed OMPwiki page
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 2.23 2.24 2.25 2.26 2.27 2.28 2.29 2.30 2.31 2.32 2.33 2.34 2.35 2.36 2.37 2.38 2.39 2.40 2.41 2.42 2.43 2.44 2.45 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
o
- OMP:0006036 ! decreased resistance to macrolide
- OMP:0006037 ! increased resistance to macrolide
- OMP:0006041 ! increased resistance to quinolone
- OMP:0006044 ! decreased resistance to beta-lactam
- OMP:0006045 ! increased resistance to beta-lactam compound
- OMP:0006057 ! decreased resistance to aminoglycoside
- OMP:0006058 ! increased resistance to aminoglycoside
- OMP:0007032 ! decreased utilization of inorganic nitrogen source
- OMP:0007070 ! decreased organic carbon source utilization
- OMP:0007075 ! decreased growth factor requirement
- OMP:0007249 ! decreased resistance to a chemical
- OMP:0007250 ! increased resistance to a chemical
- OMP:0007521 ! decreased population growth in high osmolarity
- OMP:0007878 ! increased resistance to an antimicrobial agent
- OMP:0007879 ! decreased resistance to an antimicrobial agent
- OMP:0007886 ! decreased resistance to a metal
- OMP:0007895 ! increased resistance to a surfactant
- OMP:0007903 ! decreased resistance to bile acids
- OMP:0007912 ! decreased resistance to a chelator
- OMP:0007937 ! decreased resistance to nutrient limitation
