OMP ST:71468 ! Escherichia coli K-12 JW0408

Strain Summary

Strain Name	Escherichia coli K-12 JW0408
Synonyms	JW0408-4
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 pgpA777(del)::FRT-kan-FRT
Strain Reference	PMID:16738554 Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:28388		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27575 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Acriflavine (acriflavinium chloride)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:74728) Acriflavine (acriflavinium chloride)	chemical concentration= 2 ug/ml normalized fitness= -3.44
OMP_AN:28389		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27552 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Azidothymidine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:10110) Azidothymidine	chemical concentration= 2.5 ng/ml normalized fitness= -5.32
OMP_AN:28390		OMP:0007879	decreased resistance to an antimicrobial agent	Relative to: OMP_AN:27550 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Ethidium Bromide	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:4883) Ethidium Bromide	chemical concentration= 10 ug/ml normalized fitness= -3.43
OMP_AN:28391		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27606 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= -3.02
OMP_AN:28392		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27616 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= -3.02
OMP_AN:28393		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27603 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -6.41
OMP_AN:28394		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27613 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -6.41
OMP_AN:28395		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27604 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Glycerol	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:17754) Glycerol	chemical concentration= 0.4% normalized fitness= -4.38
OMP_AN:28396		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27614 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Glycerol	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:17754) Glycerol	chemical concentration= 0.4% normalized fitness= -4.38
OMP_AN:28397		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27605 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Maltose monohydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23615261) D-(+) Maltose monohydrate	chemical concentration= 0.1% normalized fitness= -6.39
OMP_AN:28398		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27615 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Maltose monohydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23615261) D-(+) Maltose monohydrate	chemical concentration= 0.1% normalized fitness= -6.39
OMP_AN:28399		OMP:0007886	decreased resistance to a metal	Relative to: OMP_AN:27580 Genotype differences: +lacZ4787(del)( +pgpA777(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Nickel stress-Ni(II)Cl2 hexahydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:53542) Nickel stress-Ni(II)Cl2 hexahydrate	chemical concentration= 1 mM (LB) normalized fitness= -8.94
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References

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