Difference between revisions of "OMP ST:71065 ! Escherichia coli K-12 BW25113 topA::SPA-kan"

From OMPwiki
(touch)
(touch)
Line 6: Line 6:
 
******************************************************************************************
 
******************************************************************************************
 
*  
 
*  
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
+
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
 
*  
 
*  
 
****************************************************************************************** -->
 
****************************************************************************************** -->
Line 60: Line 60:
 
******************************************************************************************
 
******************************************************************************************
 
*  
 
*  
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
+
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
 
*  
 
*  
 
****************************************************************************************** -->
 
****************************************************************************************** -->
Line 66: Line 66:
 
|- align='left' bgcolor='#CCCCFF'
 
|- align='left' bgcolor='#CCCCFF'
 
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:37550
 +
|
 +
 +
|
 +
OMP:0007879
 +
|
 +
decreased resistance to an antimicrobial agent
 +
|
 +
Relative to: OMP_AN:27552
 +
 +
<hr>Genotype differences:<br>
 +
+lacZ4787(del)( +topA  -lacZ4787(del)
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
 +
*temperature:37C
 +
*medium:LB agar
 +
*medium:Azidothymidine
 +
|
 +
ECO:0007005
 +
|
 +
high throughput direct assay evidence used in manual assertion
 +
|
 +
PMID:21185072
 +
|
 +
towards some (CHEBI:10110) Azidothymidine
 +
|
 +
 +
*chemical concentration=  1 ng/ml
 +
*normalized fitness= -3.34
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  

Revision as of 13:07, 23 October 2019

Strain Summary

Strain Name

Escherichia coli K-12 BW25113 topA::SPA-kan

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 topA::SPA-kan

Strain Reference

PMID:21185072[1]

Strain availability
Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes



Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:37550

OMP:0007879

decreased resistance to an antimicrobial agent

Relative to: OMP_AN:27552


Genotype differences:

+lacZ4787(del)( +topA -lacZ4787(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:Azidothymidine
ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[1]

towards some (CHEBI:10110) Azidothymidine

  • chemical concentration= 1 ng/ml
  • normalized fitness= -3.34


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. 1.0 1.1 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page