Difference between revisions of "OMP ST:413 ! Escherichia coli K-12 AW569"

From OMPwiki
(Table edited by Kcunningham via TableEdit)
(Table edited by Kcunningham via TableEdit)
 
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|- align='left' bgcolor='#CCCCFF'
 
|- align='left' bgcolor='#CCCCFF'
 
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:409
 +
|
 +
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:102
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:maltose
 +
|
 +
ECO:0005608
 +
|
 +
tumble frequency assay evidence
 +
|
 +
PMID:333433
 +
|
 +
CHEBI:17306 maltose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:410
 +
|
 +
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:105
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:aspartate
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005608
 +
|
 +
tumble frequency assay evidence
 +
|
 +
PMID:333433
 +
|
 +
CHEBI:17053 aspartate
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:411
 +
|
 +
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:400
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:AiBu
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005608
 +
|
 +
tumble frequency assay evidence
 +
|
 +
PMID:333433
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:412
 +
|
 +
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:401
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:galactose
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:333433
 +
|
 +
CHEBI:28260 galactose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:413
 +
|
 +
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:402
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:ribose
 +
|
 +
ECO:0005609
 +
|
 +
capillary assay evidence
 +
|
 +
PMID:333433
 +
|
 +
CHEBI:33942 ribose
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:414
 +
|
 +
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:403
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:acetate
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005608
 +
|
 +
tumble frequency assay evidence
 +
|
 +
PMID:333433
 +
|
 +
CHEBI:30089 acetate
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:415
 +
|
 +
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:404
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:benzoate
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005608
 +
|
 +
tumble frequency assay evidence
 +
|
 +
PMID:333433
 +
|
 +
CHEBI:16150 benzoate
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:416
 +
|
 +
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:405
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:indole
 +
|
 +
ECO:0005608
 +
|
 +
tumble frequency assay evidence
 +
|
 +
PMID:333433
 +
|
 +
CHEBI:35581 indole
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:417
 +
|
 +
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:406
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:leucine
 +
|
 +
ECO:0005608
 +
|
 +
tumble frequency assay evidence
 +
|
 +
PMID:333433
 +
|
 +
CHEBI:15603 leucine
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:418
 +
|
 +
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:407
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:Ni(II)
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005608
 +
|
 +
tumble frequency assay evidence
 +
|
 +
PMID:333433
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:419
 +
|
 +
 +
|
 +
OMP:0007005
 +
|
 +
decreased negative chemotaxis
 +
|
 +
Relative to: OMP_AN:408
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:Co(II)
 +
*medium:chemotaxis medium
 +
|
 +
ECO:0005608
 +
|
 +
tumble frequency assay evidence
 +
|
 +
PMID:333433
 +
|
 +
CHEBI:48828 Co(II)
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:420
 +
|
 +
 +
|
 +
OMP:0007041
 +
|
 +
decreased positive chemotaxis
 +
|
 +
Relative to: OMP_AN:421
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:30C
 +
*medium:chemotaxis medium
 +
*medium:serine
 +
|
 +
ECO:0005608
 +
|
 +
tumble frequency assay evidence
 +
|
 +
PMID:333433
 +
|
 +
CHEBI:17115 serine
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:541
 +
|
 +
 +
|
 +
OMP:0000053
 +
|
 +
presence of negative chemotaxis
 +
|
 +
Relative to: OMP_AN:540
 +
 +
<hr>Genotype differences:<br>
 +
+tsr-1 +tar
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*temperature:35C
 +
*medium:motility medium
 +
*medium:phenol (5 mM)
 +
|
 +
ECO:0005607
 +
|
 +
tethered cell assay evidence
 +
|
 +
PMID:3025180
 +
|
 +
CHEBI:15882 phenol
 +
|
 +
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  

Latest revision as of 12:14, 27 September 2016

Strain Summary

Strain Name

Escherichia coli K-12 AW569

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

Lambda- araC14 fhuA31 galK2(Oc) galT22 glnX44(AS) hisG4(Oc) lacY1 leuB6(Am) mgl-51 mtl-1 rfbC1 rpsL136(StrR) thiE1 thr-1 tsr-1 tsx-78 xylA5 tar

Strain Reference

PMID:333433[1]

Strain availability
Ancestry

parent:

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:409

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:102

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:maltose
 ECO:0005608

tumble frequency assay evidence

PMID:333433[1]

CHEBI:17306 maltose

OMP_AN:410

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:105

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:aspartate
  • medium:chemotaxis medium
 ECO:0005608

tumble frequency assay evidence

PMID:333433[1]

CHEBI:17053 aspartate

OMP_AN:411

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:400

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:AiBu
  • medium:chemotaxis medium
 ECO:0005608

tumble frequency assay evidence

PMID:333433[1]

OMP_AN:412

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:401

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:galactose
 ECO:0005609

capillary assay evidence

PMID:333433[1]

CHEBI:28260 galactose

OMP_AN:413

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:402

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:ribose
 ECO:0005609

capillary assay evidence

PMID:333433[1]

CHEBI:33942 ribose

OMP_AN:414

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:403

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:acetate
  • medium:chemotaxis medium
 ECO:0005608

tumble frequency assay evidence

PMID:333433[1]

CHEBI:30089 acetate

OMP_AN:415

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:404

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:benzoate
  • medium:chemotaxis medium
 ECO:0005608

tumble frequency assay evidence

PMID:333433[1]

CHEBI:16150 benzoate

OMP_AN:416

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:405

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:indole
 ECO:0005608

tumble frequency assay evidence

PMID:333433[1]

CHEBI:35581 indole

OMP_AN:417

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:406

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:leucine
 ECO:0005608

tumble frequency assay evidence

PMID:333433[1]

CHEBI:15603 leucine

OMP_AN:418

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:407

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:Ni(II)
  • medium:chemotaxis medium
 ECO:0005608

tumble frequency assay evidence

PMID:333433[1]

OMP_AN:419

OMP:0007005

decreased negative chemotaxis

Relative to: OMP_AN:408

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:Co(II)
  • medium:chemotaxis medium
 ECO:0005608

tumble frequency assay evidence

PMID:333433[1]

CHEBI:48828 Co(II)

OMP_AN:420

OMP:0007041

decreased positive chemotaxis

Relative to: OMP_AN:421

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:30C
  • medium:chemotaxis medium
  • medium:serine
 ECO:0005608

tumble frequency assay evidence

PMID:333433[1]

CHEBI:17115 serine

OMP_AN:541

OMP:0000053

presence of negative chemotaxis

Relative to: OMP_AN:540

Genotype differences:

+tsr-1 +tar

Condition differences:

no differences

  • temperature:35C
  • medium:motility medium
  • medium:phenol (5 mM)
 ECO:0005607

tethered cell assay evidence

PMID:3025180[2]

CHEBI:15882 phenol


edit table



Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Springer, MS et al. (1977) Sensory transduction in Escherichia coli: two complementary pathways of information processing that involve methylated proteins. Proc. Natl. Acad. Sci. U.S.A. 74 3312-6 PubMed OMPwiki page
  2. ↑ Imae, Y et al. (1987) Phenol: a complex chemoeffector in bacterial chemotaxis. J. Bacteriol. 169 371-9 PubMed OMPwiki page
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