Difference between revisions of "OMP ST:21495 ! Saccharomyces cerevisiae BY4742 ftr1-delta"

From OMPwiki
(Page creation by DemoMaint)
 
(Table edited by $2 via TableEdit)
 
(4 intermediate revisions by one other user not shown)
Line 2: Line 2:
  
 
==Strain Summary==
 
==Strain Summary==
<newTableEdit>
+
<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.21485.D5ace72ff5cf71-->
Template:Strain_info_table
+
<!--
</newTableEdit>
+
******************************************************************************************
 +
*
 +
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 +
*
 +
****************************************************************************************** -->
 +
{|  id="D5ace72ff5cf71"  class=" tableEdit Strain_info_table" 
 +
 
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
 +
||
 +
Saccharomyces cerevisiae BY4742 ftr1-delta
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 +
||
 +
 
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 +
||
 +
*Pangenome: Saccharomyces cerevisiae
 +
*Subspecies and/or strain: BY4742
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 +
||
 +
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 ftr1-delta
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 +
||
 +
PMID:12140549
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 +
||
 +
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YER145C Dharmacon]
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 +
||
 +
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
 +
|-
 +
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 +
||
 +
 
 +
 
 +
|- class="tableEdit_footer"
 +
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21485.D5ace72ff5cf71&page=21485&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
 +
|}
 +
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.21485.D5ace72ff5cf71--></protect>
  
  
Line 11: Line 55:
  
 
==Phenotype Annotation==
 
==Phenotype Annotation==
<newTableEdit>
+
<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.21485.V5ace72ff5df13-->
Template:OMP_annotation_table
+
<!--
</newTableEdit>
+
******************************************************************************************
 +
*
 +
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 +
*
 +
****************************************************************************************** -->
 +
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V5ace72ff5df13"  class=" tableEdit OMP_annotation_table dataTable" 
 +
|- align='left' bgcolor='#CCCCFF'
 +
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:24829
 +
|
 +
 
 +
|
 +
OMP:0007070
 +
|
 +
decreased organic carbon source utilization
 +
|
 +
Relative to: OMP_AN:24801
 +
 
 +
<hr>Genotype differences:<br>
 +
+ftr1-delta
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
medium:YPGal
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
 +
|
 +
2% w/v (111 mM) galactose
 +
|-
 +
|
 +
OMP_AN:25127
 +
|
 +
 
 +
|
 +
OMP:0007010
 +
|
 +
decreased growth at alkaline pH
 +
|
 +
Relative to: OMP_AN:24805
 +
 
 +
<hr>Genotype differences:<br>
 +
+ftr1-delta
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
*medium:YPD
 +
*pH:8
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:25295
 +
|
 +
 
 +
|
 +
OMP:0007776
 +
|
 +
decreased population growth on defined medium
 +
|
 +
Relative to: OMP_AN:24806
 +
 
 +
<hr>Genotype differences:<br>
 +
+ftr1-delta
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
medium:synthetic complete medium (SC)
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:25375
 +
|
 +
 
 +
|
 +
OMP:0007776
 +
|
 +
decreased population growth on defined medium
 +
|
 +
Relative to: OMP_AN:24807
 +
 
 +
<hr>Genotype differences:<br>
 +
+ftr1-delta
 +
<hr>Condition differences:<br>
 +
no differences
 +
|
 +
medium:synthetic minimal medium + his/leu/ura
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine
 +
 
 +
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine
 +
 
 +
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
 +
|
 +
 +
 
 +
|- class="tableEdit_footer"
 +
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21485.V5ace72ff5df13&page=21485&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
 +
|}
 +
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.21485.V5ace72ff5df13--></protect>
  
  

Latest revision as of 22:09, 9 September 2019

Strain Summary

Strain Name

Saccharomyces cerevisiae BY4742 ftr1-delta

Synonyms
Taxon Information
  • Pangenome: Saccharomyces cerevisiae
  • Subspecies and/or strain: BY4742
Genotype

MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 ftr1-delta

Strain Reference

PMID:12140549[1]

Strain availability

Dharmacon

Ancestry

parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742

Annotated phenotypes



Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:24829

OMP:0007070

decreased organic carbon source utilization

Relative to: OMP_AN:24801


Genotype differences:

+ftr1-delta


Condition differences:

no differences

medium:YPGal

ECO:0000336

competitive growth assay evidence

PMID:12140549[1]

CHEBI:28260 galactose

2% w/v (111 mM) galactose

OMP_AN:25127

OMP:0007010

decreased growth at alkaline pH

Relative to: OMP_AN:24805


Genotype differences:

+ftr1-delta


Condition differences:

no differences

  • medium:YPD
  • pH:8
ECO:0000336

competitive growth assay evidence

PMID:12140549[1]

OMP_AN:25295

OMP:0007776

decreased population growth on defined medium

Relative to: OMP_AN:24806


Genotype differences:

+ftr1-delta


Condition differences:

no differences

medium:synthetic complete medium (SC)

ECO:0000336

competitive growth assay evidence

PMID:12140549[1]

OMP_AN:25375

OMP:0007776

decreased population growth on defined medium

Relative to: OMP_AN:24807


Genotype differences:

+ftr1-delta


Condition differences:

no differences

medium:synthetic minimal medium + his/leu/ura

ECO:0000336

competitive growth assay evidence

PMID:12140549[1]

CHEBI:15971 L-histidine

CHEBI:15603 L-leucine

CHEBI:17568 uracil



Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. 1.0 1.1 1.2 1.3 1.4 Giaever, G et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418 387-91 PubMed OMPwiki page