Difference between revisions of "OMP ST:159 ! Escherichia coli K-12 MG1655"
Kcunningham (talk | contribs) (Table edited by Kcunningham via TableEdit) |
Kcunningham (talk | contribs) (Table edited by Kcunningham via TableEdit) |
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OMP:0000067 | OMP:0000067 | ||
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− | cell motility by swarming | + | presence of cell motility by swarming |
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Relative to: | Relative to: | ||
Line 120: | Line 120: | ||
ECO:0005803 | ECO:0005803 | ||
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− | + | motility assay evidence | |
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PMID:17391508 | PMID:17391508 | ||
Line 232: | Line 232: | ||
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*temperature:37C | *temperature:37C | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:P76143 lsrF | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7650 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7646 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Acacia honey (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Acacia honey (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:P28307 csgA | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7651 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7647 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Acacia honey (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Acacia honey (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:P77257 lsrA | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7652 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7648 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Acacia honey (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Acacia honey (0.5%) | ||
+ | *medium:LB medium | ||
+ | | | ||
+ | ECO:0000109 | ||
+ | | | ||
+ | reverse transcription polymerase chain reaction evidence | ||
+ | | | ||
+ | PMID:22047137 | ||
+ | | | ||
+ | UniProtKB:P76142 lsrB | ||
+ | | | ||
+ | |||
+ | |- | ||
+ | | | ||
+ | OMP_AN:7653 | ||
+ | | | ||
+ | |||
+ | | | ||
+ | OMP:0000267 | ||
+ | | | ||
+ | increased gene expression | ||
+ | | | ||
+ | Relative to: OMP_AN:7649 | ||
+ | |||
+ | <hr>Genotype differences:<br> | ||
+ | no differences | ||
+ | <hr>Condition differences:<br> | ||
+ | medium:Acacia honey (0.5%)? | ||
+ | | | ||
+ | *temperature:37C | ||
+ | *medium:Acacia honey (0.5%) | ||
*medium:LB medium | *medium:LB medium | ||
| | | |
Revision as of 13:14, 12 December 2016
Contents
Strain Summary
Strain Name |
Escherichia coli K-12 MG1655 |
---|---|
Synonyms |
CGSC #6300, ATCC 47076 |
Taxon Information |
|
Genotype |
F- Lambda- rph-1 |
Strain Reference | |
Strain availability | |
Ancestry | |
Annotated phenotypes |
|
Notes
Phenotype Annotation
Annotation ID | not | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
---|---|---|---|---|---|---|---|---|---|---|
OMP_AN:357 |
OMP:0007253 |
presence of host colonization |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
ECO:0001027 |
colony counting evidence |
|||||
OMP_AN:1353 |
OMP:0000067 |
presence of cell motility by swarming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
OMP_AN:7646 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P28307 csgA |
|||
OMP_AN:7647 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P77257 lsrA |
|||
OMP_AN:7648 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P76142 lsrB |
|||
OMP_AN:7649 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P76143 lsrF |
|||
OMP_AN:7650 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7646 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P28307 csgA |
|||
OMP_AN:7651 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7647 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P77257 lsrA |
|||
OMP_AN:7652 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7648 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P76142 lsrB |
|||
OMP_AN:7653 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7649 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P76143 lsrF |
| ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Jensen, KF (1993) The Escherichia coli K-12 "wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels. J. Bacteriol. 175 3401-7 PubMed OMPwiki page
- ↑ Autieri, SM et al. (2007) L-fucose stimulates utilization of D-ribose by Escherichia coli MG1655 DeltafucAO and E. coli Nissle 1917 DeltafucAO mutants in the mouse intestine and in M9 minimal medium. Infect. Immun. 75 5465-75 PubMed OMPwiki page
- ↑ Gómez-Gómez, JM et al. (2007) A novel role for RecA under non-stress: promotion of swarming motility in Escherichia coli K-12. BMC Biol. 5 14 PubMed OMPwiki page
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 Lee, JH et al. (2011) Low concentrations of honey reduce biofilm formation, quorum sensing, and virulence in Escherichia coli O157:H7. Biofouling 27 1095-104 PubMed OMPwiki page