OMP ST:1083 ! Escherichia coli K-12 JW5343

Strain Summary

Strain Name	Escherichia coli K-12 JW5343
Synonyms	JW5343-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 gatY721(del)::kan
Strain Reference	Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:995		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +gatY721(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:36022		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27594 Genotype differences: +lacZ4787(del)( +gatY721(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:SDS (CHEBI:8984) +EDTA (CHEBI:64758)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:64758 + CHEBI:8984) SDS (CHEBI:8984) +EDTA (CHEBI:64758)	chemical concentration= 0.5%/0.5mM %/0.5mM normalized fitness= -3.79
OMP_AN:36023		OMP:0007249	decreased resistance to a chemical	Relative to: OMP_AN:27575 Genotype differences: +lacZ4787(del)( +gatY721(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Acriflavine (acriflavinium chloride)	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:74728) Acriflavine (acriflavinium chloride)	chemical concentration= 2 ug/ml normalized fitness= -4.81
OMP_AN:36024		OMP:0007896	decreased resistance to a surfactant	Relative to: OMP_AN:27582 Genotype differences: +lacZ4787(del)( +gatY721(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:SDS	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:8984) SDS	chemical concentration= 0.5 % normalized fitness= -3.89
OMP_AN:36025		OMP:0006044	decreased resistance to beta-lactam	Relative to: OMP_AN:27533 Genotype differences: +lacZ4787(del)( +gatY721(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Carbenicillin disodium	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:34609) Carbenicillin disodium	chemical concentration= 0.5 ug/ml normalized fitness= -3.83
OMP_AN:36026		OMP:0006061	decreased resistance to tetracycline	Relative to: OMP_AN:27522 Genotype differences: +lacZ4787(del)( +gatY721(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Doxycycline hyclate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:34730) Doxycycline hyclate	chemical concentration= 0.5 ug/ml normalized fitness= -3.82
OMP_AN:36027		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27500 Genotype differences: +lacZ4787(del)( +gatY721(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Trimethoprim	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:45924) Trimethoprim	chemical concentration= 0.2 ug/ml normalized fitness= 3.72
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References

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