Difference between revisions of "OMP ST:1022 ! Escherichia coli K-12 JW5503"

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Revision as of 22:15, 14 September 2018

Strain Summary

Strain Name

Escherichia coli K-12 JW5503

Synonyms

JW5503-1

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 tolC732(del)::kan

Strain Reference

Coli Genetic Stock Center

Strain availability

Coli Genetic Stock Center

Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes



Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:934

OMP:0007092

decreased motility by swarming

Relative to: OMP_AN:881


Genotype differences:

+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +tolC732(del) -IN(rrnD-rrnE)1


Condition differences:

no differences

  • temperature:33C
  • medium:swarming motility medium
ECO:0007192

motility assay evidence used in manual assertion

PMID:17122336[1]

OMP_AN:27247

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27246


Genotype differences:

+tolC732(del)


Condition differences:

no differences

  • temperature:37C
  • medium:LB agar
  • medium:SDS (0.5%)
ECO:0007082

colony size evidence used in manual assertion

PMID:21185072[2]

towards:SDS RO:0002503:CHEBI:8984


fitness score -23.2


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. Inoue, T et al. (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189 950-7 PubMed OMPwiki page
  2. Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page